Experiment information
Accession CRX034182
Organism Arabidopsis thaliana
Title Degradation_Col_8h_rep1
BioProject PRJCA001119
BioSample SAMC049538
Platform Illumina HiSeq X Ten
Library
Library name Construction protocol Strategy Source Selection Layout
0.1 g two-week-old seedlings were transferred to 2 ml incubation buffer (1mM PIPES, pH 6.25, 1 mM Sodium Citrate, 1 mM KCl, 15 mM Sucrose) in a 24-well plate. Cordycepin was added to a final concentration of 0.5 mM. The plate was rotated for 75 rpm at 23°C. The seedlings were harvested at the time point 0, 0.5, 1, 2, 4, and 8 hours and were quickly frozen in liquid nitrogen. Total RNA was isolated with TRIzol (Invitrogen, 15596026). mRNA-seq libraries were constructed using the strand-specific protocol for Illumina sequencing and were sequenced with HiSeq X ten system in the pair-end 150-nt mode. RNA-Seq TRANSCRIPTOMIC PolyA PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 300
Release date2020-11-16
Run
Run accession Run data file information
File nameFile size (MB)
CRR038715 CRR038715_f1.fastq.gz
CRR038715_r2.fastq.gz
1,352.08
1,566.9
SubmitterQing Huan (qhuan@genetics.ac.cn)
OrganizationInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences
Date submitted2018-11-26