CRA001149 Information
Title: OsNSUN2-mediated 5-methylcytidine mRNA modification enhances rice adaptation to high-temperature
BioProject: PRJCA001058 /
Release date: 2020-03-06
Files: 80
File size: 310.09 GB
Publication
Journal name
Developmental Cell
Year
2020
DOI
10.1016/j.devcel.2020.03.009
PubMed ID
32275888

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX081828 RNA-Seq of Ribo-Seq input replicate 2 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126448
Run accession Run alias Run data file information
CRR104643 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours, RNA-Seq of Ribo-Seq input replicate 2 File: CRR104643_f1.fastq.gz
File: CRR104643_r2.fastq.gz
CRX081827 RNA-Seq of Ribo-Seq input replicate 1 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126447
Run accession Run alias Run data file information
CRR104642 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours, RNA-Seq of Ribo-Seq input replicate 1 File: CRR104642_f1.fastq.gz
File: CRR104642_r2.fastq.gz
CRX081826 RNA-Seq of Ribo-Seq input replicate 2 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126446
Run accession Run alias Run data file information
CRR104641 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour, RNA-Seq of Ribo-Seq input replicate 2 File: CRR104641_f1.fastq.gz
File: CRR104641_r2.fastq.gz
CRX081825 RNA-Seq of Ribo-Seq input replicate 1 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126445
Run accession Run alias Run data file information
CRR104640 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour, RNA-Seq of Ribo-Seq input replicate 1 File: CRR104640_f1.fastq.gz
File: CRR104640_r2.fastq.gz
CRX081824 RNA-Seq of Ribo-Seq input replicate 2 of Oryza sativa wild type (NIP) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126444
Run accession Run alias Run data file information
CRR104639 Oryza sativa wild type (NIP) with 36°C treatment for 48 hours, RNA-Seq of Ribo-Seq input replicate 2 File: CRR104639_f1.fastq.gz
File: CRR104639_r2.fastq.gz
CRX081823 RNA-Seq of Ribo-Seq input replicate 1 of Oryza sativa wild type (NIP) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126443
Run accession Run alias Run data file information
CRR104638 Oryza sativa wild type (NIP) with 36°C treatment for 48 hours, RNA-Seq of Ribo-Seq input replicate 1 File: CRR104638_f1.fastq.gz
File: CRR104638_r2.fastq.gz
CRX081822 RNA-Seq of Ribo-Seq input replicate 2 of Oryza sativa wild type (NIP) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126442
Run accession Run alias Run data file information
CRR104637 Oryza sativa wild type (NIP) with 36°C treatment for 0 hour, RNA-Seq of Ribo-Seq input replicate 2 File: CRR104637_f1.fastq.gz
File: CRR104637_r2.fastq.gz
CRX081821 RNA-Seq of Ribo-Seq input replicate 1 of Oryza sativa wild type (NIP) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126441
Run accession Run alias Run data file information
CRR104636 Oryza sativa wild type (NIP) with 36°C treatment for 0 hour, RNA-Seq of Ribo-Seq input replicate 1 File: CRR104636_f1.fastq.gz
File: CRR104636_r2.fastq.gz
CRX081820 Ribo-Seq replicate 2 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126440
Run accession Run alias Run data file information
CRR104635 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours, Ribo-Seq replicate2 File: CRR104635_f1.fastq.gz
File: CRR104635_r2.fastq.gz
CRX081819 Ribo-Seq replicate 1 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126439
Run accession Run alias Run data file information
CRR104634 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 48 hours, Ribo-Seq replicate1 File: CRR104634_f1.fastq.gz
File: CRR104634_r2.fastq.gz
CRX081818 Ribo-Seq replicate 2 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126438
Run accession Run alias Run data file information
CRR104633 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour, Ribo-Seq replicate2 File: CRR104633_f1.fastq.gz
File: CRR104633_r2.fastq.gz
CRX081817 Ribo-Seq replicate 1 of Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126437
Run accession Run alias Run data file information
CRR104632 Oryza sativa osnsun2-1 (mutant) with 36°C treatment for 0 hour, Ribo-Seq replicate1 File: CRR104632_f1.fastq.gz
File: CRR104632_r2.fastq.gz
CRX081816 Ribo-Seq replicate 2 of Oryza sativa wild type (NIP) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126436
Run accession Run alias Run data file information
CRR104631 Oryza sativa wild type (NIP) with 36°C treatment for 48 hours, Ribo-Seq replicate2 File: CRR104631_f1.fastq.gz
File: CRR104631_r2.fastq.gz
CRX081815 Ribo-Seq replicate 1 of Oryza sativa wild type (NIP) with 36°C treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC126435
Run accession Run alias Run data file information
CRR104630 Oryza sativa wild type (NIP) with 36°C treatment for 48 hours, Ribo-Seq replicate1 File: CRR104630_f1.fastq.gz
File: CRR104630_r2.fastq.gz
CRX081814 Ribo-Seq replicate 2 of Oryza sativa wild type (NIP) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126434
Run accession Run alias Run data file information
CRR104629 Oryza sativa wild type (NIP) with 36°C treatment for 0 hour, Ribo-Seq replicate2 File: CRR104629_f1.fastq.gz
File: CRR104629_r2.fastq.gz
CRX081813 Ribo-Seq replicate 1 of Oryza sativa wild type (NIP) with 36°C treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC126433
Run accession Run alias Run data file information
CRR104628 Oryza sativa wild type (NIP) with36°C treatment for 0 hour, Ribo-Seq replicate1 File: CRR104628_f1.fastq.gz
File: CRR104628_r2.fastq.gz
CRX030717 RNA-BisSeq of osnsun2-1 (mutant) with 36℃ treatment for 48 hours Oryza sativa Illumina HiSeq X Ten SAMC047029
Run accession Run alias Run data file information
CRR034388 rice_osnsun2-1-48h-BS File: CRR034388_f1.fastq.gz
File: CRR034388_r2.fastq.gz
CRX030716 RNA-BisSeq of osnsun2-1 (mutant) with 36℃ treatment for 24 hours Oryza sativa Illumina HiSeq X Ten SAMC047028
Run accession Run alias Run data file information
CRR034387 rice_osnsun2-1-24h-BS File: CRR034387_f1.fastq.gz
File: CRR034387_r2.fastq.gz
CRX030715 RNA-BisSeq of osnsun2-1 (mutant) with 36℃ treatment for 6 hours Oryza sativa Illumina HiSeq X Ten SAMC047027
Run accession Run alias Run data file information
CRR034386 rice_osnsun2-1-6h-BS File: CRR034386_f1.fastq.gz
File: CRR034386_r2.fastq.gz
CRX030714 RNA-BisSeq of osnsun2-1 (mutant) with 36℃ treatment for 0 hour Oryza sativa Illumina HiSeq X Ten SAMC047026
Run accession Run alias Run data file information
CRR034385 rice_osnsun2-1-0h-BS File: CRR034385_f1.fastq.gz
File: CRR034385_r2.fastq.gz
Submitter:Chunchun Gao (gaochunchun@big.ac.cn)
Organization:Beijing Institute of Genomics, Chinese Academy of Sciences
Date submitted:2018-10-09