Experiment information
Accession CRX030689
Organism Oryza sativa
Title XN0437S_Genome_500bp
BioProject PRJCA001057
BioSample SAMC046979
Platform Illumina HiSeq 2500
Library
Library name Construction protocol Strategy Source Selection Layout
XN0437S_Genome_500bp Fourteen days after germination, young leaves were harvested from HTS and HSS and used for genomic DNA isolation using a DNeasy Plant Mini Kit (Qiagen, Germany) according to the manufacturer's instructions. After quality assessment by agarose gel electrophoresis and Nanodrop (Nanodrop Technologies, Wilmington, DE, US) and quantification by a Qubit fluorometer (Thermo Fisher Scientific, Waltham, MA), the DNA was used to construct sequencing libraries by SeqCap EZ Choice Library (Roche NimbleGen, USA). Six libraries of 170 bp, 500 bp, 800 bp, 2 kb, 5 kb, and 10 kb were constructed. After the library quality was assessed by an Agilent2100 Bioanalyzer, a paired-end sequencing strategy was used on the Illumina HiSeq 2500 platform. WGS GENOMIC PCR PAIRED
Processing Planned read length (bp) for mate 1: 101
Planned read length (bp) for mate 2: 101
Insert size (bp): 200
Release date2018-10-17
Run
Run accession Run data file information
File nameFile size (MB)
CRR034435 CRR034435_f1.fastq.gz
CRR034435_r2.fastq.gz
1,049.98
1,072.87
CRR034436 CRR034436_f1.fastq.gz
CRR034436_r2.fastq.gz
1,063.68
1,088.15
CRR034437 CRR034437_f1.fastq.gz
CRR034437_r2.fastq.gz
1,056.49
1,086.91
CRR034438 CRR034438_f1.fastq.gz
CRR034438_r2.fastq.gz
527.99
541.59
CRR034439 CRR034439_f1.fastq.gz
CRR034439_r2.fastq.gz
1,289.75
1,203.85
CRR034440 CRR034440_f1.fastq.gz
CRR034440_r2.fastq.gz
1,250.69
1,163.94
CRR034441 CRR034441_f1.fastq.gz
CRR034441_r2.fastq.gz
951.9
885.17
SubmitterLiao Jiang-Lin (jlliao514815@163.com)
OrganizationJiangxi Agricultural University
Date submitted2018-10-09