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Experiment information
Accession CRX030682
Organism Oryza sativa
Title XN0437T_Genome_170bp
BioProject PRJCA001057
BioSample SAMC046978
Platform Illumina HiSeq 2500
Library
Library name Construction protocol Strategy Source Selection Layout
XN0437T_Genome_170bp Fourteen days after germination, young leaves were harvested from HTS and HSS and used for genomic DNA isolation using a DNeasy Plant Mini Kit (Qiagen, Germany) according to the manufacturer's instructions. After quality assessment by agarose gel electrophoresis and Nanodrop (Nanodrop Technologies, Wilmington, DE, US) and quantification by a Qubit fluorometer (Thermo Fisher Scientific, Waltham, MA), the DNA was used to construct sequencing libraries by SeqCap EZ Choice Library (Roche NimbleGen, USA). Six libraries of 170 bp, 500 bp, 800 bp, 2 kb, 5 kb, and 10 kb were constructed. After the library quality was assessed by an Agilent2100 Bioanalyzer, a paired-end sequencing strategy was used on the Illumina HiSeq 2500 platform. WGS GENOMIC PCR PAIRED
Processing Planned read length (bp) for mate 1: 101
Planned read length (bp) for mate 2: 101
Insert size (bp): 200
Release date2018-10-17
Run
Run accession Run data file information
File nameFile size (MB)
CRR034395 CRR034395_f1.fastq.gz
CRR034395_r2.fastq.gz 		344.51
339.38
CRR034396 CRR034396_f1.fastq.gz
CRR034396_r2.fastq.gz 		356.85
354.35
CRR034397 CRR034397_f1.fastq.gz
CRR034397_r2.fastq.gz 		346.19
341.43
CRR034398 CRR034398_f1.fastq.gz
CRR034398_r2.fastq.gz 		357.52
354.08
CRR034399 CRR034399_f1.fastq.gz
CRR034399_r2.fastq.gz 		351.42
346.6
CRR034400 CRR034400_f1.fastq.gz
CRR034400_r2.fastq.gz 		354.12
349.57
CRR034401 CRR034401_f1.fastq.gz
CRR034401_r2.fastq.gz 		347.76
342.59
CRR034402 CRR034402_f1.fastq.gz
CRR034402_r2.fastq.gz 		340.06
336.75
CRR034403 CRR034403_f1.fastq.gz
CRR034403_r2.fastq.gz 		344.82
340.84
CRR034404 CRR034404_f1.fastq.gz
CRR034404_r2.fastq.gz 		338.89
335.19
CRR034405 CRR034405_f1.fastq.gz
CRR034405_r2.fastq.gz 		348.16
343.93
CRR034406 CRR034406_f1.fastq.gz
CRR034406_r2.fastq.gz 		340.01
335.5
CRR034407 CRR034407_f1.fastq.gz
CRR034407_r2.fastq.gz 		353.17
349.17
CRR034408 CRR034408_f1.fastq.gz
CRR034408_r2.fastq.gz 		2.3
2.21
CRR034409 CRR034409_f1.fastq.gz
CRR034409_r2.fastq.gz 		2,571.54
2,463.69
SubmitterLiao Jiang-Lin (jlliao514815@163.com)
OrganizationJiangxi Agricultural University
Date submitted2018-10-09
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