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CRA000852 Information
Title: Human Embryo Hi-C
BioProject: PRJCA000806 /
Release date: 2019-12-10
Files: 124
File size: 2322.88 GB
Publication
Article title
Key role for CTCF in establishing chromatin structure in human embryos
Journal name
Nature
Year
2019
DOI
10.1038/s41586-019-1812-0
PubMed ID
31801998

Dataset Downlaod
MetaData:
CRA000852.xlsx
Files:
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX052430 human siCTCF Hi-C replicate3 Homo sapiens Illumina HiSeq X Ten SAMC072703
Run accession Run alias Run data file information
CRR058145 HMHiCCTR3-1 File: CRR058145_f1.fq.gz
File: CRR058145_r2.fq.gz
CRR058146 HMHiCCTR3-2 File: CRR058146_f1.fq.gz
File: CRR058146_r2.fq.gz
CRR058147 HMHiCCTR3-3 File: CRR058147_f1.fq.gz
File: CRR058147_r2.fq.gz
CRX052429 human 8-cell (amanitin plus CTCF mRNA) mixed sample replicate2 Homo sapiens Illumina HiSeq X Ten SAMC072702
Run accession Run alias Run data file information
CRR058144 HAMACFR2 File: CRR058144_f1.fq.gz
File: CRR058144_r2.fq.gz
CRX052428 human 8-cell (amanitin plus CTCF mRNA) mixed sample replicate1 Homo sapiens Illumina HiSeq X Ten SAMC072702
Run accession Run alias Run data file information
CRR058143 HAMACFR1 File: CRR058143_f1.fq.gz
File: CRR058143_r2.fq.gz
CRX052427 human amanitin-treated 8-cell mixed sample Homo sapiens Illumina HiSeq X Ten SAMC072701
Run accession Run alias Run data file information
CRR058142 HAMAmix File: CRR058142_f1.fq.gz
File: CRR058142_r2.fq.gz
CRX052426 human morula mixed sample Homo sapiens Illumina HiSeq X Ten SAMC072700
Run accession Run alias Run data file information
CRR058140 HMmix File: CRR058140_f1.fq.gz
File: CRR058140_r2.fq.gz
CRR058141 HMmix File: CRR058141_f1.fq.gz
File: CRR058141_r2.fq.gz
CRX052425 human 8-cell mixed sample Homo sapiens Illumina HiSeq X Ten SAMC072699
Run accession Run alias Run data file information
CRR058138 H8Cmix File: CRR058138_f1.fq.gz
File: CRR058138_r2.fq.gz
CRR058139 H8Cmix File: CRR058139_f1.fq.gz
File: CRR058139_r2.fq.gz
CRX052424 human 2-cell mixed sample Homo sapiens Illumina HiSeq X Ten SAMC072698
Run accession Run alias Run data file information
CRR058137 H2Cmix File: CRR058137_f1.fq.gz
File: CRR058137_r2.fq.gz
CRX037090 mouse morula Hi-C replicate2 Mus Illumina HiSeq X Ten SAMC052428
Run accession Run alias Run data file information
CRR041726 MMRR2 File: CRR041726_f1.fq.gz
File: CRR041726_r2.fq.gz
CRR041727 MMRR2 File: CRR041727_f1.fq.gz
File: CRR041727_r2.fq.gz
CRX037089 mouse morula Hi-C replicate1 Mus Illumina HiSeq X Ten SAMC052428
Run accession Run alias Run data file information
CRR041724 MMRR1 File: CRR041724_f1.fq.gz
File: CRR041724_r2.fq.gz
CRR041725 MMRR1 File: CRR041725_f1.fq.gz
File: CRR041725_r2.fq.gz
CRX037079 human control 8-cell RNA replicate2 Homo sapiens Illumina HiSeq X Ten SAMC051814
Run accession Run alias Run data file information
CRR041661 Hcon8CRNAR2 File: CRR041661_f1.fq.gz
File: CRR041661_r2.fq.gz
CRX037078 human control 8-cell RNA replicate1 Homo sapiens Illumina HiSeq X Ten SAMC051814
Run accession Run alias Run data file information
CRR041660 Hcon8CRNAR1 File: CRR041660_f1.fq.gz
File: CRR041660_r2.fq.gz
CRX037077 human alpha amanitin 8-cell RNA replicate2 Homo sapiens Illumina HiSeq X Ten SAMC051813
Run accession Run alias Run data file information
CRR041625 HAMA8CRNAR2 File: CRR041625_f1.fq.gz
File: CRR041625_r2.fq.gz
CRX037076 human alpha amanitin 8-cell RNA replicate1 Homo sapiens Illumina HiSeq X Ten SAMC051813
Run accession Run alias Run data file information
CRR041624 HAMA8CRNAR1 File: CRR041624_f1.fq.gz
File: CRR041624_r2.fq.gz
CRX037075 human single blastocyst ultra-low-input Hi-C replictae2 Homo sapiens Illumina HiSeq X Ten SAMC051812
Run accession Run alias Run data file information
CRR041723 HBltUltraR2 File: CRR041723_f1.fq.gz
File: CRR041723_r2.fq.gz
CRX037074 human single blastocyst ultra-low-input Hi-C replictae1 Homo sapiens Illumina HiSeq X Ten SAMC051812
Run accession Run alias Run data file information
CRR041721 HBltUltraR1 File: CRR041721_f1.fq.gz
File: CRR041721_r2.fq.gz
CRR041722 HBltUltraR1 File: CRR041722_f1.fq.gz
File: CRR041722_r2.fq.gz
CRX037073 mouse single E3.5 ultra-low-input Hi-C Mus Illumina HiSeq X Ten SAMC051811
Run accession Run alias Run data file information
CRR041691 ME35Ultra File: CRR041691_f1.fq.gz
File: CRR041691_r2.fq.gz
CRX037072 human alpha amanitin 8-cell Hi-C replicate2 Homo sapiens Illumina HiSeq X Ten SAMC051810
Run accession Run alias Run data file information
CRR041690 HAMA8CR2 File: CRR041690_f1.fq.gz
File: CRR041690_r2.fq.gz
CRX037071 human alpha amanitin 8-cell Hi-C replicate1 Homo sapiens Illumina HiSeq X Ten SAMC051809
Run accession Run alias Run data file information
CRR041689 HAMA8CR1 File: CRR041689_f1.fq.gz
File: CRR041689_r2.fq.gz
CRX037070 HeLa and HT22 mixed Hi-C Homo sapiens Illumina HiSeq X Ten SAMC051807
Run accession Run alias Run data file information
CRR041687 somaMixR1 File: CRR041687_f1.fq.gz
File: CRR041687_r2.fq.gz
CRR041688 somaMixR1 File: CRR041688_f1.fq.gz
File: CRR041688_r2.fq.gz
CRX037069 sperm mixed Hi-C replicate4 Homo sapiens Illumina HiSeq X Ten SAMC051808
Run accession Run alias Run data file information
CRR041685 SPmixR4 File: CRR041685_f1.fq.gz
File: CRR041685_r2.fq.gz
CRR041686 SPmixR4 File: CRR041686_f1.fq.gz
File: CRR041686_r2.fq.gz
Submitter:Xuepeng Chen (chenxp@big.ac.cn)
Organization:Beijing Institute of Genomics, Chinese Academy of Sciences
Date submitted:2018-03-28