| Accession | CRX008024 |
| Organism | Mus musculus cytomegalovirus 2 |
| Title | 2-cell Control RNA-seq |
| BioProject | PRJCA000241 |
| BioSample | SAMC007621 |
| Platform | Illumina HiSeq 4000 |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
the RNA-seq data were mapped to the mm10 genome by STAR (version 2.5.2b) (Dobin et al., 2013)with default parameters. Then the gene expression FPKM was calculated by Cuffinks (version 2.2.1) using the refFat database from the UCSC genome browser. The track is sequencing depth normalized and generated at 10bp window. Maternal and Paternal gene expression is based on assigned reads from SNP tracking method to distinguish maternal or paternal origin. |
WGA |
TRANSCRIPTOMIC |
PolyA |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
|
| Release date | 2017-07-13 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR008799 |
CRD018520
CRD018521
|
1,091.14
1,214.6
|
| CRR008800 |
CRD018522
CRD018523
|
1,128.57
1,290.26
|
|
| Submitter | Xuepeng Chen (chenxp@big.ac.cn) |
|---|
| Organization | Beijing Institute of Genomics, Chinese Academy of Sciences |
|---|
| Date submitted | 2016-11-28 |
|---|
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