Gene Expression Nebulas
A data portal of transcriptomic profiles across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000010: RNA Sequencing analysis of different genetically characterized lung cancer cell lines

BioProject ID:    PRJNA431798     Original Project ID:    GSE109720    

Strategy:
Species:
Tissue:
Healthy Condition:
Cell Type:
Cell Line:
Biological Context:
Baseline:
-
Genetic:
Mutation
Phenotypic:
Disease
Environmental:
Abiotic stress
Spatial:
Cell line
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.9927
Median Coverage:
1.71
Max Sequencing Length:
150
#Max Replicate:
3

Gene Expression Patterns

OR

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000010 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate