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a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database Profile

NGD

General information

URL: http://nelumbo.biocloud.net
Full name: Nelumbo Genome Database
Description: An integrative genomic database for variant and gene expression of Nelumbo (sacred lotus)
Year founded: 2019
Last update: 2019-08-26
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Country/Region: China
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Contact information

University/Institution: Wuhan Institute of Landscape Architecture
Address: Key Laboratory of Aquatic Botany and Watershed Ecology Wuhan Botanical Garden, Chinese Academy of Sciences Wuhan 430074, Hubei, China
City: Wuhan
Province/State: Hubei
Country/Region: China
Contact name (PI/Team): Jinming Chen
Contact email (PI/Helpdesk): jmchen@wbgcas.cn

Publications

33514746
Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera. [PMID: 33514746]
Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jinming Chen, Tao Shi

Sacred lotus (Nelumbo nucifera, or lotus) is one of the most widely grown aquatic plant species with important uses, such as in water gardening and in vegetable and herbal medicine. A public genomic database of lotus would facilitate studies of lotus and other aquatic plant species. Here, we constructed an integrative database: the Nelumbo Genome Database (NGD, http://nelumbo.biocloud.net ). This database is a collection of the most updated lotus genome assembly and contains information on both gene expression in different tissues and coexpression networks. In the NGD, we also integrated genetic variants and key traits from our 62 newly sequenced lotus cultivars and 26 previously reported cultivars, which are valuable for lotus germplasm studies. As applications including BLAST, BLAT, Primer, Annotation Search, Variant and Trait Search are deployed, users can perform sequence analyses and gene searches via the NGD. Overall, the valuable genomic resources provided in the NGD will facilitate future studies on population genetics and molecular breeding of lotus.

Sci Data. 2021:8(1) | 0 Citations (from Europe PMC, 2021-02-20)

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Created on: 2021-02-18
Curated by:
lin liu [2021-02-19]
Dong Zou [2021-02-18]