Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database information

PED (Plant editosome database)

General information

Description: a curated database of RNA editosome in plants that is dedicated to the curation, integration and standardization of plant editosome data.
Year founded: 2018
Last update: 2018-09-20
Version: v1.0
Accessibility:
Manual:
Accessible
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Country/Region: China
Data type:
RNA
Data object:
Database category:
Major organism:
NA
Keywords:

Contact information

University/Institution: Beijing Institute of Genomics, Chinese Academy of Sciences
Address: No.1 Beichen West Road, Chaoyang District, Beijing 100101, China
City: Beijing
Province/State:
Country/Region: China
Contact name (PI/Team): Zhang Zhang
Contact email (PI/Helpdesk): zhangzhang@big.ac.cn

Record metadata

Created on: 2019-01-04
Curated by:
Lina Ma [2019-03-08]
Dong Zou [2019-01-08]
Dong Zou [2019-01-04]

Ranking

All databases:
1215/4548 (73.307%)
Modification:
119/185 (36.216%)
Literature:
142/284 (50.352%)
1215
Total Rank
2
Citations
2
z-index

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Publications

30364952
Plant editosome database: a curated database of RNA editosome in plants. [PMID: 30364952]
Man Li, Lin Xia, Yuansheng Zhang, Guangyi Niu, Mengwei Li, Pei Wang, Yang Zhang, Jian Sang, Dong Zou, Songnian Hu, Lili Hao, Zhang Zhang

RNA editing plays an important role in plant development and growth, enlisting a number of editing factors in the editing process and accordingly revealing the diversity of plant editosomes for RNA editing. However, there is no resource available thus far that integrates editosome data for a variety of plants. Here, we present Plant Editosome Database (PED; http://bigd.big.ac.cn/ped), a curated database of RNA editosome in plants that is dedicated to the curation, integration and standardization of plant editosome data. Unlike extant relevant databases, PED incorporates high-quality editosome data manually curated from related publications and organelle genome annotations. In the current version, PED integrates a complete collection of 98 RNA editing factors and 20 836 RNA editing events, covering 203 organelle genes and 1621 associated species. In addition, it contains functional effects of editing factors in regulating plant phenotypes and includes detailed experimental evidence. Together, PED serves as an important resource to help researchers investigate the RNA editing process across a wide range of plants and thus would be of broad utility for the global plant research community.

Nucleic Acids Res. 2019:47(D1) | 2 Citations (from Europe PMC, 2020-05-30)