Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database information

GSA (Genome Sequence Archive)

General information

Description: The Genome Sequence Archive (GSA) is a data repository for archiving raw sequence reads. It accepts data submissions from all over the world and provides free access to all publicly available data for global scientific communities.
Year founded: 2015
Last update: 2019-07-29
Version: 2.1
Accessibility:
Manual:
Accessible
Real time : Checking...
Country/Region: China
Data type:
Data object:
Database category:
Major organism:
NA
Keywords:

Contact information

University/Institution: Beijing Institute of Genomics, Chinese Academy of Sciences
Address: No.1 Beichen West Road, Chaoyang District
City: Beijing
Province/State:
Country/Region: China
Contact name (PI/Team): Wenming Zhao
Contact email (PI/Helpdesk): zhaowm@big.ac.cn

Record metadata

Created on: 2016-05-05
Curated by:
chen xu [2019-11-06]
Lina Ma [2018-06-08]
Lina Ma [2018-05-25]
Lina Ma [2017-06-19]
Zhang Zhang [2016-05-29]

Ranking

All databases:
368/4549 (91.932%)
Raw bio-data:
25/451 (94.678%)
Metadata:
23/436 (94.954%)
368
Total Rank
58
Citations
19.333
z-index

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5 Stars (2)
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Word cloud

Publications

28387199
GSA: Genome Sequence Archive. [PMID: 28387199]
Wang Y, Song F, Zhu J, Zhang S, Yang Y, Chen T, Tang B, Dong L, Ding N, Zhang Q, Bai Z, Dong X, Chen H, Sun M, Zhai S, Sun Y, Yu L, Lan L, Xiao J, Fang X, Lei H, Zhang Z, Zhao W.

With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate. To provide an efficient and easy-to-use platform for managing huge sequence data, here we present Genome Sequence Archive (GSA; http://bigd.big.ac.cn/gsa or http://gsa.big.ac.cn), a data repository for archiving raw sequence data. In compliance with data standards and structures of the International Nucleotide Sequence Database Collaboration (INSDC), GSA adopts four data objects (BioProject, BioSample, Experiment, and Run) for data organization, accepts raw sequence reads produced by a variety of sequencing platforms, stores both sequence reads and metadata submitted from all over the world, and makes all these data publicly available to worldwide scientific communities. In the era of big data, GSA is not only an important complement to existing INSDC members by alleviating the increasing burdens of handling sequence data deluge, but also takes the significant responsibility for global big data archive and provides free unrestricted access to all publicly available data in support of research activities throughout the world. Copyright © 2017. Production and hosting by Elsevier Ltd.

Genomics Proteomics Bioinformatics. 2017:15(1) | 58 Citations (from Europe PMC, 2020-04-04)