Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database information

DoGSD (Dog Genome SNP Database)

General information

Description: Dog Genome SNP Database (DoGSD) is a data container for the variation information of dog/wolf genomes. It was designed and constructed as an SNPs detector and visualization tool to provide the research community a useful resource for the study of dog's population, evolution, phenotype and life habit.
Year founded: 2013
Last update: 2014-7-26
Version: v2.0
Accessibility:
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Accessible
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Country/Region: China
Data type:
DNA
Data object:
Database category:
Major organism:
Keywords:

Contact information

University/Institution: Beijing Institute of Genomics, Chinese Academy of Sciences
Address: No.1 Beichen West Road, Chaoyang District
City: Beijing
Province/State:
Country/Region: China
Contact name (PI/Team): Wenming Zhao
Contact email (PI/Helpdesk): zhaowm@big.ac.cn

Record metadata

Created on: 2015-06-20
Curated by:
Lina Ma [2018-06-14]
Lina Ma [2016-06-03]
Zhang Zhang [2016-05-08]
Zhang Zhang [2016-05-06]
Jian SA [2016-04-04]
Jian SA [2015-12-07]
Jian SA [2015-06-26]

Ranking

All databases:
867/4656 (81.4%)
Genotype phenotype and variation:
112/628 (82.325%)
867
Total Rank
42
Citations
8.4
z-index

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Publications

25404132
DoGSD: the dog and wolf genome SNP database. [PMID: 25404132]
Bai B, Zhao WM, Tang BX, Wang YQ, Wang L, Zhang Z, Yang HC, Liu YH, Zhu JW, Irwin DM, Wang GD, Zhang YP.

The rapid advancement of next-generation sequencing technology has generated a deluge of genomic data from domesticated dogs and their wild ancestor, grey wolves, which have simultaneously broadened our understanding of domestication and diseases that are shared by humans and dogs. To address the scarcity of single nucleotide polymorphism (SNP) data provided by authorized databases and to make SNP data more easily/friendly usable and available, we propose DoGSD (http://dogsd.big.ac.cn), the first canidae-specific database which focuses on whole genome SNP data from domesticated dogs and grey wolves. The DoGSD is a web-based, open-access resource comprising ? 19 million high-quality whole-genome SNPs. In addition to the dbSNP data set (build 139), DoGSD incorporates a comprehensive collection of SNPs from two newly sequenced samples (1 wolf and 1 dog) and collected SNPs from three latest dog/wolf genetic studies (7 wolves and 68 dogs), which were taken together for analysis with the population genetic statistics, Fst. In addition, DoGSD integrates some closely related information including SNP annotation, summary lists of SNPs located in genes, synonymous and non-synonymous SNPs, sampling location and breed information. All these features make DoGSD a useful resource for in-depth analysis in dog-/wolf-related studies. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Nucleic Acids Res. 2015:43(Database issue) | 42 Citations (from Europe PMC, 2020-08-08)