Accession

PRJCA002485

Title

sex determination analysis for Populus euphratica and Populus alba

Relevance

Evolution

Data types

Whole genome sequencing
Genome sequencing and assembly

Organisms

Populus euphratica
Populus alba

Description

30 female and 30 male individuals were collected and sequenced to identify the sex determination region by GWAS analysis. We also generate Oxford Nanopore long reads from a female P. euphratica and a female P. alba for genome assembly and sex determination region assembly.

Sample scope

Multispecies

Release date

2020-12-05

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)		31561123001
National Natural Science Foundation of China (NSFC)		31922061
National Natural Science Foundation of China (NSFC)		41871044
National Natural Science Foundation of China (NSFC)		31500502
National Key Research and Development Program of China		2016YFD0600101
Fundamental Research Funds for the Central Universities		SCU2019D013

Submitter

Wenlu Yang (1123875647@qq.com)

Organization

Sichuan University

Submission date

2020-04-03

Project Data

Resource name	Description
BioSample (130) show	-
SAMC226547	genome assembly of Populus alba: female genome sequence
SAMC226546	genome assembly of Populus euphratica: female genome sequence
SAMC207340	sex determinantion region of Populus alba: W assembly sequence
SAMC207339	sex determination region of Populus euphratica: Y assembly sequence
SAMC206761	sRNA-seq of Populus euphratica: male flower bud
SAMC206760	sRNA-seq of Populus euphratica: female flower bud
SAMC153575	ultra-long nanopore-seq of P. alba: fresh leaf of female PalF_ultralong
SAMC153574	ultra-long nanopore-seq of P. euphratica: fresh leaf of male PeuM_ultralong
SAMC153573	Nanopore-seq of P. alba: fresh leaf of female PalF_nano
SAMC153572	Nanopore-seq of P. euphratica: fresh leaf of female PeuF_nano
SAMC153571	Illumina-seq of P. alba: leaf of male PalS60
SAMC153570	Illumina-seq of P. alba: leaf of male PalS59
SAMC153569	Illumina-seq of P. alba: leaf of male PalS58
SAMC153568	Illumina-seq of P. alba: leaf of male PalS57
SAMC153567	Illumina-seq of P. alba: leaf of male PalS56
SAMC153566	Illumina-seq of P. alba: leaf of male PalS55
SAMC153565	Illumina-seq of P. alba: leaf of male PalS54
SAMC153564	Illumina-seq of P. alba: leaf of male PalS53
SAMC153563	Illumina-seq of P. alba: leaf of male PalS52
SAMC153562	Illumina-seq of P. alba: leaf of male PalS51
SAMC153561	Illumina-seq of P. alba: leaf of male PalS50
SAMC153560	Illumina-seq of P. alba: leaf of male PalS49
SAMC153559	Illumina-seq of P. alba: leaf of male PalS48
SAMC153558	Illumina-seq of P. alba: leaf of male PalS47
SAMC153557	Illumina-seq of P. alba: leaf of male PalS46
SAMC153556	Illumina-seq of P. alba: leaf of male PalS45
SAMC153555	Illumina-seq of P. alba: leaf of male PalS44
SAMC153554	Illumina-seq of P. alba: leaf of male PalS43
SAMC153553	Illumina-seq of P. alba: leaf of male PalS42
SAMC153552	Illumina-seq of P. alba: leaf of male PalS41
SAMC153551	Illumina-seq of P. alba: leaf of male PalS40
SAMC153550	Illumina-seq of P. alba: leaf of male PalS39
SAMC153549	Illumina-seq of P. alba: leaf of male PalS38
SAMC153548	Illumina-seq of P. alba: leaf of male PalS37
SAMC153547	Illumina-seq of P. alba: leaf of male PalS36
SAMC153546	Illumina-seq of P. alba: leaf of male PalS35
SAMC153545	Illumina-seq of P. alba: leaf of male PalS34
SAMC153544	Illumina-seq of P. alba: leaf of male PalS33
SAMC153543	Illumina-seq of P. alba: leaf of male PalS32
SAMC153542	Illumina-seq of P. alba: leaf of male PalS31
SAMC153541	Illumina-seq of P. alba: leaf of female PalS30
SAMC153540	Illumina-seq of P. alba: leaf of female PalS29
SAMC153539	Illumina-seq of P. alba: leaf of female PalS28
SAMC153538	Illumina-seq of P. alba: leaf of female PalS27
SAMC153537	Illumina-seq of P. alba: leaf of female PalS26
SAMC153536	Illumina-seq of P. alba: leaf of female PalS25
SAMC153535	Illumina-seq of P. alba: leaf of female PalS24
SAMC153534	Illumina-seq of P. alba: leaf of female PalS23
SAMC153533	Illumina-seq of P. alba: leaf of female PalS22
SAMC153532	Illumina-seq of P. alba: leaf of female PalS21
SAMC153531	Illumina-seq of P. alba: leaf of female PalS20
SAMC153530	Illumina-seq of P. alba: leaf of female PalS19
SAMC153529	Illumina-seq of P. alba: leaf of female PalS18
SAMC153528	Illumina-seq of P. alba: leaf of female PalS17
SAMC153527	Illumina-seq of P. alba: leaf of female PalS16
SAMC153526	Illumina-seq of P. alba: leaf of female PalS15
SAMC153525	Illumina-seq of P. alba: leaf of female PalS14
SAMC153524	Illumina-seq of P. alba: leaf of female PalS13
SAMC153523	Illumina-seq of P. alba: leaf of female PalS12
SAMC153522	Illumina-seq of P. alba: leaf of female PalS11
SAMC153521	Illumina-seq of P. alba: leaf of female PalS10
SAMC153520	Illumina-seq of P. alba: leaf of female PalS09
SAMC153519	Illumina-seq of P. alba: leaf of female PalS08
SAMC153518	Illumina-seq of P. alba: leaf of female PalS07
SAMC153517	Illumina-seq of P. alba: leaf of female PalS06
SAMC153516	Illumina-seq of P. alba: leaf of female PalS05
SAMC153515	Illumina-seq of P. alba: leaf of female PalS04
SAMC153514	Illumina-seq of P. alba: leaf of female PalS03
SAMC153513	Illumina-seq of P. alba: leaf of female PalS02
SAMC153512	Illumina-seq of P. alba: leaf of female PalS01
SAMC153511	Illumina-seq of P. euphratica: leaf of male XA0
SAMC153510	Illumina-seq of P. euphratica: leaf of male X59
SAMC153509	Illumina-seq of P. euphratica: leaf of male X57
SAMC153508	Illumina-seq of P. euphratica: leaf of male X55
SAMC153507	Illumina-seq of P. euphratica: leaf of male X53
SAMC153506	Illumina-seq of P. euphratica: leaf of male X51
SAMC153505	Illumina-seq of P. euphratica: leaf of male X49
SAMC153504	Illumina-seq of P. euphratica: leaf of male X47
SAMC153503	Illumina-seq of P. euphratica: leaf of male X45
SAMC153502	Illumina-seq of P. euphratica: leaf of male X43
SAMC153501	Illumina-seq of P. euphratica: leaf of male X41
SAMC153500	Illumina-seq of P. euphratica: leaf of male X39
SAMC153499	Illumina-seq of P. euphratica: leaf of male X37
SAMC153498	Illumina-seq of P. euphratica: leaf of male X35
SAMC153497	Illumina-seq of P. euphratica: leaf of male X33
SAMC153496	Illumina-seq of P. euphratica: leaf of male X31
SAMC153495	Illumina-seq of P. euphratica: leaf of male X29
SAMC153494	Illumina-seq of P. euphratica: leaf of male X27
SAMC153493	Illumina-seq of P. euphratica: leaf of male X25
SAMC153492	Illumina-seq of P. euphratica: leaf of male X23
SAMC153491	Illumina-seq of P. euphratica: leaf of male X21
SAMC153490	Illumina-seq of P. euphratica: leaf of male X19
SAMC153489	Illumina-seq of P. euphratica: leaf of male X17
SAMC153488	Illumina-seq of P. euphratica: leaf of male X15
SAMC153487	Illumina-seq of P. euphratica: leaf of male X13
SAMC153486	Illumina-seq of P. euphratica: leaf of male X11
SAMC153485	Illumina-seq of P. euphratica: leaf of male X09
SAMC153484	Illumina-seq of P. euphratica: leaf of male X07
SAMC153483	Illumina-seq of P. euphratica: leaf of male X04
SAMC153482	Illumina-seq of P. euphratica: leaf of male X01
SAMC153481	Illumina-seq of P. euphratica: leaf of female C62
SAMC153480	Illumina-seq of P. euphratica: leaf of female C61
SAMC153479	Illumina-seq of P. euphratica: leaf of female C59
SAMC153478	Illumina-seq of P. euphratica: leaf of female C57
SAMC153477	Illumina-seq of P. euphratica: leaf of female C55
SAMC153476	Illumina-seq of P. euphratica: leaf of female C53
SAMC153475	Illumina-seq of P. euphratica: leaf of female C51
SAMC153474	Illumina-seq of P. euphratica: leaf of female C49
SAMC153473	Illumina-seq of P. euphratica: leaf of female C47
SAMC153472	Illumina-seq of P. euphratica: leaf of female C45
SAMC153471	Illumina-seq of P. euphratica: leaf of female C43
SAMC153470	Illumina-seq of P. euphratica: leaf of female C41
SAMC153469	Illumina-seq of P. euphratica: leaf of female C39
SAMC153468	Illumina-seq of P. euphratica: leaf of female C37
SAMC153467	Illumina-seq of P. euphratica: leaf of female C35
SAMC153466	Illumina-seq of P. euphratica: leaf of female C33
SAMC153465	Illumina-seq of P. euphratica: leaf of female C31
SAMC153464	Illumina-seq of P. euphratica: leaf of female C29
SAMC153463	Illumina-seq of P. euphratica: leaf of female C27
SAMC153462	Illumina-seq of P. euphratica: leaf of female C25
SAMC153461	Illumina-seq of P. euphratica: leaf of female C23
SAMC153460	Illumina-seq of P. euphratica: leaf of female C21
SAMC153459	Illumina-seq of P. euphratica: leaf of female C19
SAMC153458	Illumina-seq of P. euphratica: leaf of female C18
SAMC153457	Illumina-seq of P. euphratica: leaf of female C15
SAMC153456	Illumina-seq of P. euphratica: leaf of female C14
SAMC153455	Illumina-seq of P. euphratica: leaf of female C11
SAMC153454	Illumina-seq of P. euphratica: leaf of female C07
SAMC153453	Illumina-seq of P. euphratica: leaf of female C03
SAMC153452	Illumina-seq of P. euphratica: leaf of C01
GSA (1)	-
CRA003138	Sex determination analysis of Populus euphratica and Populus alba