| Accession |
PRJCA002191 |
| Title |
Genome sequencing of Thinopyrum elongatum |
| Relevance |
Agricultural |
| Data types |
Whole genome sequencing
Genome sequencing and assembly
Genome sequencing
Assembly
|
| Organisms |
Thinopyrum elongatum
|
| Description |
Thinopyrum elongatum (syn. Agropyron elongatum or Lophopyrum elongatum) is a grass of the Triticeae family with a diploid E genome (2n = 2X = 14) that is native to Eurasia and which is thought to be the basic genome donor for various tetra-, hexa-, and even deca-ploid species in the Thinopyrum genus. We sequenced and assembled the genome of T. elongatum using a combination of technologies, which resulted in a 4.63 Gb assembly with a contig N50 size of 2.15 Mb and a scaffold N50 size of 73.24 Mb. A total of 141 scaffolds were anchored and oriented onto 7 pseudo-chromosomes, which account for 96% of the estimated genome size (4.78 Gb,) and 98% of the assembled genome sequences. |
| Sample scope |
Monoisolate |
| Release date |
2020-03-02 |
| Grants |
| Agency |
program |
Grant ID |
Grant title |
| National Natural Science Foundation of China (NSFC)
|
|
31520103911
|
|
| National Natural Science Foundation of China (NSFC)
|
|
31871610
|
|
| National Natural Science Foundation of China (NSFC)
|
|
31901492
|
|
| Ministry of Science and Technology of the People
|
|
2016YFD0100102
|
|
| National Key Program on Transgenic Research from the Ministry of Agriculture of China
|
|
2016ZX08002003
|
|
| National Key Program on Transgenic Research from the Ministry of Agriculture of China
|
|
2016ZX08009
|
|
| Agricultural Variety Improvement Project of Shandong Province Grant
|
|
2019LZGC016
|
|
|
|
| Accessions in other database |
| Accession |
Database name |
| PRJNA540081
|
NCBI
|
|
|
| Submitter |
Silong
Sun (sunsl@sdau.edu.cn)
|
| Organization |
Shandong Agricultural University |
| Submission date |
2020-02-04 |
