Accession PRJCA001600
Title Accurate quantification of circular RNAs identifies extensive circular isoform switching events
Relevance Genetics
Data types Transcriptome or Gene expression
Raw sequence reads
Organisms Homo sapiens
Description In this study, we performed RNA interference-mediated knockdown of TRA2B, PTBP1 and MBNL1 in HeLa cells, and constructed 2x101bp paired end RNA-seq libraries for mock treatment and three knockdown samples. We divided each sample into two fractions, where rRNA depletion and RNase R digestion were permed to one fraction, and the other fraction was only treated by rRNA depletion.
Sample scope Monoisolate
Release date 2019-07-25
Publication
PubMed ID Article title Journal name DOI Year
31900416 Accurate quantification of circular RNAs identifies extensive circular isoform switching events Nature Communications 10.1038/s41467-019-13840-9 2020
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) 31722031
Submitter Jinyang    Zhang  (zhangjinyang@biols.ac.cn)
Organization Beijing Institutes of Life Sciences
Submission date 2019-07-25

Project Data

Resource name Description
BioSample (12)  show -
GSA (1) -
CRA001838 Circular RNAs transcriptome