Accession PRJCA001385
Title genome-wide association study of Litter Sizes in Dazu Black Goats
Relevance Agricultural
Umbrella project

MMDB: Molecular Module-based Designer Breeding Systems

XDA08040000: Improvement of breeding stations

XDA08040100: Improvement of breeding stations

XDA08040105: Improvement of molecular breeding station in Southwest China

Data types Whole genome sequencing
Phenotype or Genotype
Variation
Genome sequencing
Organisms Capra hircus
Description Samples and Methods: Genomic DNA was extracted from the ear tissue of 31 Dazu black goats follwing SPC procedures DNA library construction and sequencing on each individual goat was performed on an Illumina HiSeq X Ten platform by Gene Denovo (Guangzhou, Guangdong, China). After sequencing, initial filtering (Li et al (2014) and mapping of the reference genomes (Capra hircus, ARS1) were by performed with BWA software14. Single nucleotide polymorphisms (SNPs) were identified using SAMtools and ANNOVAR. Genotype frequency and the fisher-test were displayed with SAS software, and the Manhattan map of SNP distribution (-Log 10 (P-value)) was done with R package
Sample scope Multiisolate
Release date 2019-04-20
Grants
Agency program Grant ID Grant title
No funding support
Chinese Academy of Sciences (CAS) Strategic Priority Research Program of Chinese Academy of Sciences (CAS) XDA08000000
Submitter Guangxin    E  (eguangxin@126.com)
Organization Southwest University
Submission date 2019-04-20

Project Data

Resource name Description
BioSample (1) -
SAMC068000 Genome-wide association study of Dazu goat