Accession PRJCA001057
Title Discovery of unique single nucleotide polymorphisms associated with high nighttime temperature stress in rice using a hybrid sequencing strategy
Relevance Agricultural
Data types Raw sequence reads
Organisms Oryza sativa
Description First, comparative transcriptomics between a heat-tolerant strain and heat-sensitive strain in response to high nighttime temperature stress was carried out using a hybrid sequencing strategy (TGS and SGS) to detect the relative differentially expressed genes (RDEGs). Second, the genomic homologous DNA sequences of the RDEGs were retrieved from the reference genome. Third, genome re-sequencing for both HTS and HSS was performed, and the generated short reads were used to call unique SNP loci for the RDEGs, using the retrieved homologous DNA sequences as a reference.
Sample scope Monoisolate
Release date 2018-10-17
Publication
PubMed ID Article title Journal name DOI Year
Discovery of unique single nucleotide polymorphisms in rice in response to high nighttime temperature stress using a hybrid sequencing strategy Environmental and Experimental Botany 10.1016/j.envexpbot.2019.02.005 2019
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) 31471467
National Natural Science Foundation of China (NSFC) 31560387
National Natural Science Foundation of China (NSFC) 31860359
Submitter Liao    Jiang-Lin  (jlliao514815@163.com)
Organization Jiangxi Agricultural University
Submission date 2018-10-07

Project Data

Resource name Description
BioSample (15)  show -
GSA (1) -
CRA001148 Discovery of unique single nucleotide polymorphisms associated with high nighttime temperature stress in rice using a hybrid sequencing strategy