| Accession |
PRJCA000851 |
| Title |
Transcriptome and methylome interactions in rice hybrids |
| Relevance |
Agricultural |
| Data types |
Epigenomics
|
| Organisms |
Oryza sativa
|
| Description |
This research reports genome-wide measurements of genetic and epigenetic patterns of inheritance through an integrative analysis of BS-seq, RNA-seq, and siRNA-seq data in two inbred parents of the Nipponbare (NPB) and Indica (93-11) variety of rice and their hybrid offspring. Overall design: We generated integrative maps of whole genome cytosine methylation profiles (BS-Seq), transcriptional profiles (RNA-seq), and small RNA profiles (sRNA-seq) to characterize two rice subspecies, Oryza sativa spp japonica (Nipponbare) and Oryza sativa spp indica (93-11) and their two reciprocal hybrid offspring using Illumina's sequencing-by-synthesis (SBS) platform. |
| Sample scope |
Multispecies |
| Release date |
2018-06-30 |
| Publication |
| PubMed ID |
Article title |
Journal name |
DOI |
Year |
| 22778444
|
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| Accessions in other database |
| Accession |
Database name |
| PRJNA168014
|
NCBI
|
|
|
| Submitter |
Fang
Liang (liangf@big.ac.cn)
|
| Organization |
Beijing Institute of Genomics, Chinese Academy of Sciences |
| Submission date |
2018-04-25 |
