WangS {QTL.gCIMapping.GUI}R Documentation

The second step of wang method

Description

Genome-wide Composite Interval Mapping

Usage

WangS(flag,CriLOD,NUM,pheRaw,chrRaw_name,yygg,mx,phe,chr_name,gen,
mapname,CLO)

Arguments

flag

fix or random model.

CriLOD

LOD score.

NUM

The number of trait.

pheRaw

Raw phenotype matrix.

chrRaw_name

raw chromosome name.

yygg

covariate matrix.

mx

raw genotype matrix.

phe

phenotype matrix.

chr_name

chromosome name.

gen

genotype matrix.

mapname

linkage map matrix.

CLO

Number of CPUs.

Author(s)

Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>

Examples

G1=data(gen)
P1=data(phe)
M1=data(map)
W1re<-WangF(phe,gen,map,yygg1=NULL,flagRIL=0,cov_en=NULL,Population="DH",1,2.5)
WangS(flag=1,CriLOD=2.5,NUM=1,pheRaw=phe,W1re$chrRaw_name,W1re$yygg,
W1re$mx,W1re$phe,W1re$chr_name,W1re$gen,W1re$mapname,CLO=1)

[Package QTL.gCIMapping.GUI version 2.0 Index]