WangS {QTL.gCIMapping}R Documentation

The second step of wang method

Description

Genome-wide Composite Interval Mapping

Usage

WangS(flag,CriLOD,NUM,pheRaw,chrRaw_name,yygg,mx,phe,chr_name,gen,
mapname,CLO)

Arguments

flag

fix or random model.

CriLOD

LOD score.

NUM

The number of trait.

pheRaw

Raw phenotype matrix.

chrRaw_name

raw chromosome name.

yygg

covariate matrix.

mx

raw genotype matrix.

phe

phenotype matrix.

chr_name

chromosome name.

gen

genotype matrix.

mapname

linkage map matrix.

CLO

Number of CPUs.

Author(s)

Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>

Examples

D1=data(DHdata)
readraw<-Readdata(file=DHdata,fileFormat="GCIM",fileICIMcov=NULL)
DoResult<-Dodata(fileFormat="GCIM",Population="DH",Model="Random",readraw)
W1re<-WangF(DoResult$pheRaw,DoResult$genRaw,DoResult$mapRaw1,
DoResult$yygg1,DoResult$flagRIL,DoResult$cov_en,Population="DH",
WalkSpeed=1,CriLOD=2.5)
WangS(DoResult$flag,CriLOD=2.5,NUM=1,DoResult$pheRaw,W1re$chrRaw_name,
W1re$yygg,W1re$mx,W1re$phe,W1re$chr_name,W1re$gen,
W1re$mapname,CLO=1)

[Package QTL.gCIMapping version 3.2 Index]