WangF {QTL.gCIMapping}R Documentation

To perform QTL mapping with wang method

Description

Genome-wide Composite Interval Mapping

Usage

WangF(pheRaw,genRaw,mapRaw1,yygg1,flagRIL,cov_en,Population,WalkSpeed,CriLOD)

Arguments

pheRaw

phenotype matrix.

genRaw

genotype matrix.

mapRaw1

linkage map matrix.

yygg1

the transformed covariate matrix .

flagRIL

if RIL or not.

cov_en

raw covariate matrix.

Population

population flag.

WalkSpeed

Walk speed for Genome-wide Scanning.(WalkSpeed=1).

CriLOD

Critical LOD scores for significant QTL (CriLOD=2.5).

Author(s)

Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>

Examples

D1=data(DHdata)
readraw<-Readdata(file=DHdata,fileFormat="GCIM",fileICIMcov=NULL)
DoResult<-Dodata(fileFormat="GCIM",Population="DH",Model="Random",readraw)
WangF(DoResult$pheRaw,DoResult$genRaw,DoResult$mapRaw1,
DoResult$yygg1,DoResult$flagRIL,DoResult$cov_en,
Population="DH",WalkSpeed=1,CriLOD=2.5)

[Package QTL.gCIMapping version 3.2 Index]