WangF {QTL.gCIMapping} | R Documentation |
Genome-wide Composite Interval Mapping
WangF(pheRaw,genRaw,mapRaw1,yygg1,flagRIL,cov_en,Population,WalkSpeed,CriLOD)
pheRaw |
phenotype matrix. |
genRaw |
genotype matrix. |
mapRaw1 |
linkage map matrix. |
yygg1 |
the transformed covariate matrix . |
flagRIL |
if RIL or not. |
cov_en |
raw covariate matrix. |
Population |
population flag. |
WalkSpeed |
Walk speed for Genome-wide Scanning.(WalkSpeed=1). |
CriLOD |
Critical LOD scores for significant QTL (CriLOD=2.5). |
Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
D1=data(DHdata) readraw<-Readdata(file=DHdata,fileFormat="GCIM",fileICIMcov=NULL) DoResult<-Dodata(fileFormat="GCIM",Population="DH",Model="Random",readraw) WangF(DoResult$pheRaw,DoResult$genRaw,DoResult$mapRaw1, DoResult$yygg1,DoResult$flagRIL,DoResult$cov_en, Population="DH",WalkSpeed=1,CriLOD=2.5)