WangS {QTL.gCIMapping} | R Documentation |
Genome-wide Composite Interval Mapping
WangS(flag,CriLOD,NUM,pheRaw,chrRaw_name,yygg,mx,phe,chr_name,gen, mapname,CLO)
flag |
fix or random model. |
CriLOD |
LOD score. |
NUM |
The number of trait. |
pheRaw |
Raw phenotype matrix. |
chrRaw_name |
raw chromosome name. |
yygg |
covariate matrix. |
mx |
raw genotype matrix. |
phe |
phenotype matrix. |
chr_name |
chromosome name. |
gen |
genotype matrix. |
mapname |
linkage map matrix. |
CLO |
Number of CPUs. |
Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
D1=data(DHdata) readraw<-Readdata(file=DHdata,fileFormat="GCIM",fileICIMcov=NULL) DoResult<-Dodata(fileFormat="GCIM",Population="DH",Model="Random",readraw) W1re<-WangF(DoResult$pheRaw,DoResult$genRaw,DoResult$mapRaw1, DoResult$yygg1,DoResult$flagRIL,DoResult$cov_en,Population="DH", WalkSpeed=1,CriLOD=2.5) WangS(DoResult$flag,CriLOD=2.5,NUM=1,DoResult$pheRaw,W1re$chrRaw_name, W1re$yygg,W1re$mx,W1re$phe,W1re$chr_name,W1re$gen, W1re$mapname,CLO=1)