WenF {QTL.gCIMapping} | R Documentation |
An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2
WenF(pheRaw,genRaw,mapRaw1,yygg1,cov_en,WalkSpeed,CriLOD,dir)
pheRaw |
phenotype matrix. |
genRaw |
genotype matrix. |
mapRaw1 |
linkage map matrix. |
yygg1 |
the transformed covariate matrix . |
cov_en |
raw covariate matrix. |
WalkSpeed |
Walk speed for Genome-wide Scanning.(WalkSpeed=1). |
CriLOD |
Critical LOD scores for significant QTL (CriLOD=2.5). |
dir |
file path in your computer. |
Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
F2=data(F2data) readraw<-Readdata(file=F2data,fileFormat="GCIM",fileICIMcov=NULL) DoResult<-Dodata(fileFormat="GCIM",Population="F2",Model="Random",readraw) WenF(DoResult$pheRaw,DoResult$genRaw,DoResult$mapRaw1, DoResult$yygg1,DoResult$cov_en,WalkSpeed=1,CriLOD=2.5, dir=tempdir())