BioCode

Archive Bioinformatics Codes for Open Source Projects

Basic Statistics

7296
Tools:
24615
Users:
7354
Organizations:
362972
Total Download Count:

Most Popular Tools

McAN a fast minimum-cost arborescence based haplotype network construction algorithm
Categories Haplotype network constructionTool Type: Application
Technologies: C, C++Download Count: 9115
DrSim DrSim is a general learning-based framework that automatically infers similarity measurement, and can be used to characterize transcriptional profiles for drug discovery with generalized good performance.
Categories Drug repositioningTool Type: Application
Technologies: Python2, Python3Download Count: 1187
ILnc Prioritizing Long Non-coding RNAs for Pan-cancer Analysis of Immune Cell Infiltration
Tool Type: Application
Technologies: RDownload Count: 6487
SNP Calling & ChIP-Seq analysis pipeline genome analysis pipeline
Categories SNP detection, De novo ChIP-seq analysisTool Type: Pipeline & Protocol
Technologies: BASHDownload Count: 0
Mako A graph-based pattern growth approach to detect complex structural variants
Categories Structural variant detectionTool Type: Toolkit
Technologies: JavaDownload Count: 0
MSIsensor-pro MSIsensor-pro: Fast, Accurate, and Matched-normal-sample-free Detection of Microsatellite Instability
Categories Prognostic biomarker identificationTool Type: Application
Technologies: C++Download Count: 2385
NGSPipe Next generation sequencing pipeline
Categories Read alignment, SNP detection, CNV detection, Structural variant detectionTool Type: Pipeline & Protocol
Technologies: BASHDownload Count: 2670
DeeReCT-TSS_release DeeReCT-TSS: A novel meta-learning-based method annotates TSS in multiple cell types based on DNA sequences and RNA-seq data
Tool Type: Application
Technologies: Python3Download Count: 820
AB-Gen A tool for antibody library design
Tool Type: Application
Technologies: Python3Download Count: 840
WBSA Web Service for Bisulfite Sequencing Data Analysis
Categories DNA methylationTool Type: Pipeline & Protocol
Technologies: Perl, RDownload Count: 0

Latest Updated Tools

MethylGenotyper: 1.0
Date: April 24, 2024
WTV 2.0: v1.0.240328
Date: April 23, 2024
HiCapR: 1.0
Date: April 19, 2024
AnnoSmk: 1.0
Date: April 13, 2024
scMlnet2.0: scMLnet2.0
Date: February 23, 2024
CCCbank: 1.0
Date: February 23, 2024
piplineForQC_v2.pl: 2.0
Date: February 18, 2024
MOINER: 1.0
Date: January 18, 2024
化和物-蛋白质关系预测平台: 1.0
Date: January 18, 2024

BioCode

McAN a fast minimum-cost arborescence based haplotype network construction algorithm

DrSim DrSim is a general learning-based framework that automatically infers similarity measurement, and can be used to characterize transcriptional profiles for drug discovery with generalized good performance.

ILnc Prioritizing Long Non-coding RNAs for Pan-cancer Analysis of Immune Cell Infiltration

SNP Calling & ChIP-Seq analysis pipeline genome analysis pipeline

Mako A graph-based pattern growth approach to detect complex structural variants

MSIsensor-pro MSIsensor-pro: Fast, Accurate, and Matched-normal-sample-free Detection of Microsatellite Instability

NGSPipe Next generation sequencing pipeline

DeeReCT-TSS_release DeeReCT-TSS: A novel meta-learning-based method annotates TSS in multiple cell types based on DNA sequences and RNA-seq data

AB-Gen A tool for antibody library design

WBSA Web Service for Bisulfite Sequencing Data Analysis