Basic Information
| SNP ID | zma9 |
|---|---|
| Organism | Zea mays |
| Genome Assembly | AGPv4 |
| Version | 1 |
| Variation Class | SNP |
| Position | 1:46538 |
| RefSNP Alleles | C/T |
| Synonyms ID |
Gene Annotation
| Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
|---|---|---|---|---|---|---|---|---|---|
| Zm00001d027230 | Zm00001d027230_T001 | synonymous_variant | protein_coding | 1245 | Ctg => Ttg | Zm00001d027230_P001 | 395 | L => L | |
| Zm00001d027231 | Zm00001d027231_T001 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P001 | - | - => - | |
| Zm00001d027231 | Zm00001d027231_T002 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P002 | - | - => - | |
| Zm00001d027231 | Zm00001d027231_T003 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P003 | - | - => - | |
| Zm00001d027231 | Zm00001d027231_T004 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P004 | - | - => - | |
| Zm00001d027231 | Zm00001d027231_T005 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P005 | - | - => - | |
| Zm00001d027231 | Zm00001d027231_T006 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P006 | - | - => - | |
| Zm00001d027231 | Zm00001d027231_T007 | downstream_gene_variant | protein_coding | - | - => - | Zm00001d027231_P007 | - | - => - |
Population Diversity
| Population | Sample # | Allele:Frequency | Genotype:Frequency |
|---|---|---|---|
| Zea_mays | 1040 | T:0.0190; C:0.9810; | C|C:0.9641; T|T:0.0021; C|T:0; |