Basic Information
| SNP ID | osa3 |
|---|---|
| Organism | Oryza sativa Japonica |
| Genome Assembly | IRGSP1.0 |
| Version | 1 |
| Variation Class | SNP |
| Position | chr1:1184 |
| RefSNP Alleles | G/A |
| Synonyms ID |
Gene Annotation
| Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
|---|---|---|---|---|---|---|---|---|---|
| Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
| Population | Sample # | Allele:Frequency | Genotype:Frequency |
|---|---|---|---|
| Indica | 2567 | G:1.00; A:0.00; | GG:1.00; AA:0.00; |
| japonica | 1499 | G:1.00; A:0.00; | GG:1.00; AG:0.00; AA:0.00; |
| Other | 635 | G:0.98; A:0.02; | GG:0.98; AA:0.02; |
| wild | 451 | G:0.99; A:0.01; | GG:0.99; AA:0.01; |