Basic Information
SNP ID | osa1 |
---|---|
Organism | Oryza sativa Japonica |
Genome Assembly | IRGSP1.0 |
Version | 1 |
Variation Class | SNP |
Position | chr1:1151 |
RefSNP Alleles | C/A |
Synonyms ID |
Gene Annotation
Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|
Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Indica | 2567 | C:1.00; A:0.00; | CC:1.00; AA:0.00; |
japonica | 1499 | C:0.96; A:0.04; | AC:0.00; CC:0.96; AA:0.03; |
Other | 635 | C:0.99; A:0.01; | CC:0.99; AC:0.00; AA:0.00; |
wild | 451 | C:1.00; A:0.00; | CC:1.00; |