Basic Information
| SNP ID | gga19719 |
|---|---|
| Organism | Gallus gallus |
| Genome Assembly | Gallus_gallus-5.0 |
| Version | 1 |
| Variation Class | SNP |
| Position | chr1:463413 |
| RefSNP Alleles | C/G |
| Synonyms ID |
Gene Annotation
| Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
|---|---|---|---|---|---|---|---|---|---|
| ENSGALG00000033149 | GCC1 | upstream_gene_variant | mRNA | 0 | - => - | ENSGALP00000050609 | 0 | - => - | |
| ENSGALG00000043476 | ARF5 | synonymous_variant | mRNA | 30 | tcG => tcC | ENSGALP00000046064 | 10 | S => S |
Population Diversity
| Population | Sample # | Allele:Frequency | Genotype:Frequency |
|---|---|---|---|
| Gallus_gallus | 103 | C:0.00; G:1.00; | GG:1.00; |
| Gallus_varius | 9 | C:0.00; G:1.00; | GG:1.00; |
Pfam Annotation
| Pfam Acc | Pfam Name | Pfam Description | Pfam Type | Pfam Clan | Gene ID | Protein ID | Protein Start | Protein End | Evalue |
|---|---|---|---|---|---|---|---|---|---|
| PF00025.20 | Arf | ADP-ribosylation factor family | Domain | CL0023 | ENSGALG00000043476 | ENSGALP00000046064 | 6 | 153 | 2.6e-67 |