Basic Information
SNP ID | chx54895212 |
---|---|
Organism | Capra hircus |
Genome Assembly | CHIR_2.0 |
Version | 1 |
Variation Class | SNP |
Position | chr5:88979303 |
RefSNP Alleles | A/G |
Synonyms ID |
Gene Annotation
Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|
intergenic_variant | - | - | - => - | - | - | - => - |
Population Diversity
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|
G2P Annotation
Breed/ Population | Sample Size | Tissue | Trait | Trait Ontology | Phenotype Type | Genotype Technology | Model | Reported Location | Effect Allele | P Value | OR | R2% | Reported Gene | Entrez Gene Symbol | QTL | PMID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Italian Garfagnina goat breed | 48 | animal | paratuberculosis resistance | animal health trait | binary | Genotyping by Array | Unclassified | CHIR_1.0:5_85352445 | 0.0005 | 102187133 | PCSK5 | 28526988 |