| URL: | https://redu.ucsd.edu |
| Full name: | A framework to find and reanalyze public mass spectrometry data |
| Description: | ReDU is a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one's own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking. |
| Year founded: | 2020 |
| Last update: | 2020-08-17 |
| Version: | 1.0 |
| Accessibility: | |
| Country/Region: | United States |
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| University/Institution: | University of California San Diego |
| Address: | Collaborative Mass Spectrometry Innovation Center, University of California, San Diego, La Jolla, CA, USA |
| City: | San Diego |
| Province/State: | California |
| Country/Region: | United States |
| Contact name (PI/Team): | Pieter C. Dorrestein |
| Contact email (PI/Helpdesk): | pdorrestein@ucsd.edu |
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ReDU: a framework to find and reanalyze public mass spectrometry data. [PMID: 32807955]
We present ReDU ( https://redu.ucsd.edu/ ), a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one's own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking. |