Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://www.ebi.ac.uk/pdbe/emdb
Full name: Electron Microscopy Data Bank
Description: The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.
Year founded: 2017
Last update: 2019-4-10
Version:
Accessibility:
Manual:
Accessible
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Country/Region: United Kingdom

Contact information

University/Institution: European Bioinformatics Institute
Address: Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.
City: Cambridge
Province/State: Cambridgeshire
Country/Region: United Kingdom
Contact name (PI/Team): Ardan Patwardhan
Contact email (PI/Helpdesk): ardan@ebi.ac.uk

Publications

28580912
Trends in the Electron Microscopy Data Bank (EMDB). [PMID: 28580912]
Patwardhan A.

Recent technological advances, such as the introduction of the direct electron detector, have transformed the field of cryo-EM and the landscape of molecular and cellular structural biology. This study analyses these trends from the vantage point of the Electron Microscopy Data Bank (EMDB), the public archive for three-dimensional EM reconstructions. Over 1000 entries were released in 2016, representing almost a quarter of the total number of entries (4431). Structures at better than 6?Å resolution now represent one of the fastest-growing categories, while the share of annually released tomography-related structures is approaching 20%. The use of direct electron detectors is growing very rapidly: they were used for 70% of the structures released in 2016, in contrast to none before 2011. Microscopes from FEI have an overwhelming lead in terms of usage, and the use of the RELION software package continues to grow rapidly after having attained a leading position in the field. China is rapidly emerging as a major player in the field, supplementing the US, Germany and the UK as the big four. Similarly, Tsinghua University ranks only second to the MRC Laboratory for Molecular Biology in terms of involvement in publications associated with cryo-EM structures at better than 4?Å resolution. Overall, the numbers point to a rapid democratization of the field, with more countries and institutes becoming involved.

Acta Crystallogr D Struct Biol. 2017:73(Pt 6) | 34 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
1773/6000 (70.467%)
Structure:
226/841 (73.246%)
Raw bio-data:
129/539 (76.252%)
1773
Total Rank
34
Citations
4.857
z-index

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Record metadata

Created on: 2018-11-27
Curated by:
Lina Ma [2019-04-16]
Lina Ma [2018-11-28]
Dong Zou [2018-11-27]