Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://pbil.univ-lyon1.fr/RTKdb
Full name: Receptor Tyrosine Kinase database
Description: Presently, most categories of RTK were identified in mammals, but in a near future other model species will be sequenced, and will bring us RTKs from other metazoan clades.We are developing the Receptor Tyrosine Kinase database (RTKdb), which is the only database on tyrosine kinase receptors presently available. In this database, protein sequences from eight model metazoan species are organized under the format previously used for the HOVERGEN, HOBACGEN and NUREBASE systems.
Year founded: 2003
Last update:
Version:
Accessibility:
Manual:
Unaccessible
Real time : Checking...
Country/Region: France

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Claude Bernard University Lyon 1
Address: Centre de Génétique Moléculaire et Cellulaire, UMR CNRS 5534, Université Claude Bernard-Lyon 1, 43 bd. du 11 Novembre 1918, 69622 Villeurbanne Cedex, France.
City: Villeurbanne
Province/State:
Country/Region: France
Contact name (PI/Team): Julien Grassot
Contact email (PI/Helpdesk): grassot@biomserv.univ-lyon1.fr

Publications

12520021
RTKdb: database of Receptor Tyrosine Kinase. [PMID: 12520021]
Grassot J, Mouchiroud G, Perrière G.

Receptor Tyrosine Kinases (RTK) are transmembrane receptors specifically found in metazoans. They represent an excellent model for studying evolution of cellular processes in metazoans because they encompass large families of modular proteins and belong to a major family of contingency generating molecules in eukaryotic cells: the protein kinases. Because tyrosine kinases have been under close scrutiny for many years in various species, they are associated with a wealth of information, mainly in mammals. Presently, most categories of RTK were identified in mammals, but in a near future other model species will be sequenced, and will bring us RTKs from other metazoan clades. Thus, collecting RTK sequences would provide a good starting point as a new model for comparative and evolutionary studies applying to multigene families. In this context, we are developing the Receptor Tyrosine Kinase database (RTKdb), which is the only database on tyrosine kinase receptors presently available. In this database, protein sequences from eight model metazoan species are organized under the format previously used for the HOVERGEN, HOBACGEN and NUREBASE systems. RTKdb can be accessed through the PBIL (Pôle Bioinformatique Lyonnais) World Wide Web server at http://pbil.univ-lyon1.fr/RTKdb/, or through the FamFetch graphical user interface available at the same address.

Nucleic Acids Res. 2003:31(1) | 18 Citations (from Europe PMC, 2024-04-06)

Ranking

All databases:
4553/6000 (24.133%)
Raw bio-data:
382/539 (29.314%)
4553
Total Rank
18
Citations
0.857
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2018-02-09
Curated by:
Mengyu Pan [2018-09-21]
Qi Wang [2018-02-24]
Yang Zhang [2018-02-09]