Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: https://mmp.sfb.uit.no/databases/
Full name: Marine Metagenomics Portal
Description: The MAR databases are a collection of richly annotated and manually curated contextual (metadata) and sequence databases. The contextual data can be accessed by browsing, searching or filtering, while the sequence data through BLAST. All data can be downloaded.
Year founded: 2018
Last update:
Version:
Accessibility:
Manual:
Accessible
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Country/Region: Norway

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Arctic University of Norway
Address: Centre for bioinformatics (SfB) Department of Chemistry, Faculty of Science and Technology UiT The Arctic University of Norway 9037 Tromsø, Norway E-mail: mmp@uit.no Phone: (+47) 77-64-46-51
City: Tromsø
Province/State:
Country/Region: Norway
Contact name (PI/Team): Nils P Willassen
Contact email (PI/Helpdesk): nils-peder.willassen@uit.no

Publications

29106641
The MAR databases: development and implementation of databases specific for marine metagenomics. [PMID: 29106641]
Klemetsen T, Raknes IA, Fu J, Agafonov A, Balasundaram SV, Tartari G, Robertsen E, Willassen NP.

We introduce the marine databases; MarRef, MarDBand MarCat (https://mmp.sfb.uit.no/databases/), which are publicly available resources that promote marine research and innovation. These data resources, which have been implemented in the Marine Metagenomics Portal (MMP) (https://mmp.sfb.uit.no/), are collections of richly annotated and manually curated contextual (metadata) and sequence databases representing three tiers of accuracy. While MarRef is a database for completely sequenced marine prokaryotic genomes, which represent a marine prokaryote reference genome database, MarDB includes all incomplete sequenced prokaryotic genomes regardless level of completeness. The last database, MarCat, represents a gene (protein) catalog of uncultivable (and cultivable) marine genes and proteins derived from marine metagenomics samples. The first versions of MarRef and MarDB contain 612 and 3726 records, respectively. Each record is built up of 106 metadata fields including attributes for sampling, sequencing, assembly and annotation in addition to the organism and taxonomic information. Currently, MarCat contains 1227 records with 55 metadata fields. Ontologies and controlled vocabularies are used in the contextual databases to enhance consistency. The user-friendly web interface lets the visitors browse, filter and search in the contextual databases and perform BLAST searches against the corresponding sequence databases. All contextual and sequence databases are freely accessible and downloadable from https://s1.sfb.uit.no/public/mar/.

Nucleic Acids Res. 2018:46(D1) | 52 Citations (from Europe PMC, 2024-04-06)

Ranking

All databases:
1146/6000 (80.917%)
Metadata:
102/619 (83.683%)
Gene genome and annotation:
359/1675 (78.627%)
1146
Total Rank
50
Citations
8.333
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
Lin Liu [2022-08-22]
Lina Ma [2018-04-19]
Aniza Aziz [2018-04-18]