Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://cis.hku.hk/CR2Cancer
Full name: CR2Cancer
Description: CR2Cancer is a comprehensive annotation and visualization database for CRs in human cancer constructed by high throughput data analysis (e.g. TCGA and CCLE) and literature mining (PubMed).
Year founded: 2018
Last update:
Version:
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Manual:
Accessible
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Country/Region: China

Contact information

University/Institution: University of Hong Kong
Address: School of Biological Sciences, The University of Hong Kong Pokfulam Road, Hong Kong, China Tel: +852 2299 0341; Fax: +852 2559 9114
City: HongKong
Province/State: HongKong
Country/Region: China
Contact name (PI/Team): Jiangwen Zhang
Contact email (PI/Helpdesk): jzhang1@hku.hk

Publications

29036683
CR2Cancer: a database for chromatin regulators in human cancer. [PMID: 29036683]
Ru B, Sun J, Tong Y, Wong CN, Chandra A, Tang ATS, Chow LKY, Wun WL, Levitskaya Z, Zhang J.

Chromatin regulators (CRs) can dynamically modulate chromatin architecture to epigenetically regulate gene expression in response to intrinsic and extrinsic signalling cues. Somatic alterations or misexpression of CRs might reprogram the epigenomic landscape of chromatin, which in turn lead to a wide range of common diseases, notably cancer. Here, we present CR2Cancer, a comprehensive annotation and visualization database for CRs in human cancer constructed by high throughput data analysis and literature mining. We collected and integrated genomic, transcriptomic, proteomic, clinical and functional information for over 400 CRs across multiple cancer types. We also built diverse types of CR-associated relations, including cancer type dependent (CR-target and miRNA-CR) and independent (protein-protein interaction and drug-target) ones. Furthermore, we manually curated around 6000 items of aberrant molecular alterations and interactions of CRs in cancer development from 5007 publications. CR2Cancer provides a user-friendly web interface to conveniently browse, search and download data of interest. We believe that this database would become a valuable resource for cancer epigenetics investigation and potential clinical application. CR2Cancer is freely available at http://cis.hku.hk/CR2Cancer.

Nucleic Acids Res. 2018:46(D1) | 13 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
3016/6000 (49.75%)
Gene genome and annotation:
899/1675 (46.388%)
Modification:
183/287 (36.585%)
Interaction:
511/982 (48.065%)
Health and medicine:
693/1394 (50.359%)
3016
Total Rank
13
Citations
2.167
z-index

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Record metadata

Created on: 2018-01-27
Curated by:
Lin Liu [2022-08-16]
Aniza Aziz [2018-04-11]
Yang Zhang [2018-01-27]