| URL: | http://xlinkdb.gs.washington.edu/ |
| Full name: | New Database and software tools to store and visualize protein interaction topology data |
| Description: | XLink-DB is designed to serve both as a storage site and an online data processing and visualization tool to enable analysis of large-scale cross-linked peptide datasets. |
| Year founded: | 2013 |
| Last update: | 2016 |
| Version: | 2.0 |
| Accessibility: | |
| Country/Region: | United States |
| Data type: | |
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| Major species: |
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| Keywords: |
| University/Institution: | University of Washington |
| Address: | |
| City: | Seattle |
| Province/State: | |
| Country/Region: | United States |
| Contact name (PI/Team): | James E.Bruce |
| Contact email (PI/Helpdesk): | jimbruce@u.washington.edu |
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XLink-DB: database and software tools for storing and visualizing protein interaction topology data. [PMID: 23413830]
As large-scale cross-linking data becomes available, new software tools for data processing and visualization are required to replace manual data analysis. XLink-DB serves as a data storage site and visualization tool for cross-linking results. XLink-DB accepts data generated with any cross-linker and stores them in a relational database. Cross-linked sites are automatically mapped onto PDB structures if available, and results are compared to existing protein interaction databases. A protein interaction network is also automatically generated for the entire data set. The XLink-DB server, including examples, and a help page are available for noncommercial use at http://brucelab.gs.washington.edu/crosslinkdbv1/ . The source code can be viewed and downloaded at https://sourceforge.net/projects/crosslinkdb/?source=directory . |