Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://bodymap.jp
Full name:
Description: BodyMap-Xs is a database for cross-species gene expression comparison.
Year founded: 2006
Last update:
Version:
Accessibility:
Manual:
Unaccessible
Real time : Checking...
Country/Region: Japan

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:
EST

Contact information

University/Institution: National Institute of Genetics
Address: 1111 Yata, Mishima, Shizuoka 411-8540, Japan
City: Shizuoka
Province/State:
Country/Region: Japan
Contact name (PI/Team): Kousaku Okubo
Contact email (PI/Helpdesk): kokubo@genes.nig.ac.jp

Publications

16381946
BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression. [PMID: 16381946]
Ogasawara O, Otsuji M, Watanabe K, Iizuka T, Tamura T, Hishiki T, Kawamoto S, Okubo K.

BodyMap-Xs (http://bodymap.jp) is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically.

Nucleic Acids Res. 2006:34(Database issue) | 19 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
4147/6000 (30.9%)
Expression:
820/1143 (28.346%)
4147
Total Rank
19
Citations
1.056
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Record metadata

Created on: 2015-09-09
Curated by:
Mengwei Li [2016-03-31]
Mengwei Li [2016-03-29]
Mengwei Li [2015-11-29]