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    • Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
    TCGA-VM-A8CD-01A PADI3 LGG chr1 17283115 17283115 G A 3_prime_UTR_variant PASS 0.43902439
    TCGA-VM-A8CD-01A CFH LGG chr1 196685138 196685138 G A p.E289K missense_variant PASS 0.373493976
    TCGA-VM-A8CD-01A HOXD4 LGG chr2 176152941 176152941 A G p.*256Wext*81 stop_lost PASS 0.328125
    TCGA-VM-A8CD-01A PLXNB1 LGG chr3 48412837 48412837 G A p.R1587W missense_variant PASS 0.369565217
    TCGA-VM-A8CD-01A POLQ LGG chr3 121436152 121436152 G T p.R2505R synonymous_variant PASS 0.246753247
    TCGA-VM-A8CD-01A ANK2 LGG chr4 113353186 113353186 C T p.T1523I missense_variant PASS 0.363636364
    TCGA-VM-A8CD-01A MCTP1 LGG chr5 94708574 94708574 A G p.Y956H missense_variant PASS 0.282608696
    TCGA-VM-A8CD-01A NCR3 LGG chr6 31589142 31589142 C T p.P177P synonymous_variant PASS 0.333333333
    TCGA-VM-A8CD-01A EGFR LGG chr7 55165304 55165304 G T p.A583S missense_variant PASS 0.169014085
    TCGA-VM-A8CD-01A EGFR LGG chr7 55165350 55165350 G T p.G598V missense_variant PASS 0.227272727