BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-S9-A7R2-01A | PRAMEF8 | LGG | chr1 | 13281662 | 13281662 | G | T | p.L378L | synonymous_variant | PASS | 0.14953271 |
| TCGA-S9-A7R2-01A | SLC1A7 | LGG | chr1 | 53105729 | 53105729 | C | A | splice_region_variant;intron_v | PASS | 0.208 | |
| TCGA-S9-A7R2-01A | LRRC7 | LGG | chr1 | 70023257 | 70023257 | G | T | p.Q521H | missense_variant | PASS | 0.227848101 |
| TCGA-S9-A7R2-01A | FGFR1 | LGG | chr1 | 152309491 | 152309491 | C | A | p.D1799Y | missense_variant | PASS | 0.124463519 |
| TCGA-S9-A7R2-01A | PTPN14 | LGG | chr1 | 214383389 | 214383389 | T | A | p.K822N | missense_variant | PASS | 0.129411765 |
| TCGA-S9-A7R2-01A | LTBP1 | LGG | chr2 | 33187033 | 33187033 | C | G | p.S460* | stop_gained | PASS | 0.181818182 |
| TCGA-S9-A7R2-01A | EPM2AIP1 | LGG | chr3 | 36991382 | 36991382 | G | A | p.R566* | stop_gained | PASS | 0.268817204 |
| TCGA-S9-A7R2-01A | FSTL1 | LGG | chr3 | 120404894 | 120404894 | A | G | p.N180N | synonymous_variant | PASS | 0.24 |
| TCGA-S9-A7R2-01A | UGT2A1 | LGG | chr4 | 69594550 | 69594550 | C | A | p.V411L | missense_variant | PASS | 0.152671756 |
| TCGA-S9-A7R2-01A | CSN3 | LGG | chr4 | 70249143 | 70249143 | G | A | p.R78H | missense_variant | PASS | 0.25862069 |