BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-HT-A61C-01A |
ADAM15 |
LGG |
chr1 |
155051010 |
155051010 |
C |
T |
|
upstream_gene_variant |
PASS |
0.375 |
| TCGA-HT-A61C-01A |
IGFN1 |
LGG |
chr1 |
201217379 |
201217379 |
G |
A |
p.A773T |
missense_variant |
PASS |
0.45751634 |
| TCGA-HT-A61C-01A |
TIMM17A |
LGG |
chr1 |
201969597 |
201969597 |
C |
T |
|
3_prime_UTR_variant |
PASS |
0.444444444 |
| TCGA-HT-A61C-01A |
CR2 |
LGG |
chr1 |
207466811 |
207466811 |
C |
T |
p.T115I |
missense_variant |
PASS |
0.328947368 |
| TCGA-HT-A61C-01A |
EXOC8 |
LGG |
chr1 |
231337103 |
231337105 |
CCA |
- |
p.V214del |
inframe_deletion |
PASS |
0.355769231 |
| TCGA-HT-A61C-01A |
HEATR5B |
LGG |
chr2 |
37062020 |
37062020 |
G |
A |
p.R539* |
stop_gained |
PASS |
0.375 |
| TCGA-HT-A61C-01A |
SPRED2 |
LGG |
chr2 |
65313955 |
65313955 |
T |
G |
p.Y268S |
missense_variant |
PASS |
0.366666667 |
| TCGA-HT-A61C-01A |
MYO7B |
LGG |
chr2 |
127627190 |
127627190 |
G |
A |
p.R1421H |
missense_variant |
PASS |
0.285714286 |
| TCGA-HT-A61C-01A |
TTN |
LGG |
chr2 |
178604155 |
178604155 |
G |
A |
p.R16537C |
missense_variant |
PASS |
0.37007874 |
| TCGA-HT-A61C-01A |
NAB1 |
LGG |
chr2 |
190673132 |
190673132 |
C |
G |
p.P329A |
missense_variant |
PASS |
0.3 |
