Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
---|---|---|---|---|---|---|---|---|---|---|---|
TCGA-FG-A4MW-01A | ZBTB40 | LGG | chr1 | 22526255 | 22526255 | G | A | p.E1193E | synonymous_variant | PASS | 0.1875 |
TCGA-FG-A4MW-01A | PTCH2 | LGG | chr1 | 44828620 | 44828620 | G | A | p.G492G | synonymous_variant | PASS | 0.357142857 |
TCGA-FG-A4MW-01A | LHX8 | LGG | chr1 | 75130586 | 75130586 | T | G | 5_prime_UTR_variant | PASS | 0.291666667 | |
TCGA-FG-A4MW-01A | PHGDH | LGG | chr1 | 119712025 | 119712025 | G | A | p.M1? | start_lost | PASS | 0.290909091 |
TCGA-FG-A4MW-01A | LCE2A | LGG | chr1 | 152699096 | 152699096 | C | T | p.G65G | synonymous_variant | PASS | 0.39516129 |
TCGA-FG-A4MW-01A | PEAR1 | LGG | chr1 | 156914784 | 156914784 | C | T | p.R1034C | missense_variant | PASS | 0.3 |
TCGA-FG-A4MW-01A | LHX4 | LGG | chr1 | 180271824 | 180271824 | T | C | intron_variant | PASS | 0.145985401 | |
TCGA-FG-A4MW-01A | ZC3H11A | LGG | chr1 | 203849842 | 203849843 | - | G | p.A586Gfs*61 | frameshift_variant | PASS | 0.277777778 |
TCGA-FG-A4MW-01A | OBSCN | LGG | chr1 | 228350934 | 228350934 | C | T | p.P6137L | missense_variant | PASS | 0.19047619 |
TCGA-FG-A4MW-01A | COLEC11 | LGG | chr2 | 3643798 | 3643798 | G | A | p.A166T | missense_variant | PASS | 0.260273973 |