BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-FG-6692-01A |
ADGRL4 |
LGG |
chr1 |
78927069 |
78927069 |
T |
A |
p.V300V |
synonymous_variant |
PASS |
0.352941176 |
TCGA-FG-6692-01A |
VCAM1 |
LGG |
chr1 |
100732599 |
100732599 |
A |
G |
p.T569T |
synonymous_variant |
PASS |
0.425287356 |
TCGA-FG-6692-01A |
FLG2 |
LGG |
chr1 |
152355736 |
152355736 |
G |
A |
p.H684Y |
missense_variant |
PASS |
0.38490566 |
TCGA-FG-6692-01A |
RNASEL |
LGG |
chr1 |
182575555 |
182575555 |
G |
A |
p.P688L |
missense_variant |
PASS |
0.390625 |
TCGA-FG-6692-01A |
GREM2 |
LGG |
chr1 |
240493044 |
240493044 |
G |
A |
p.F144F |
synonymous_variant |
PASS |
0.391752577 |
TCGA-FG-6692-01A |
SDC1 |
LGG |
chr2 |
20204159 |
20204159 |
G |
A |
p.P94L |
missense_variant |
PASS |
0.321678322 |
TCGA-FG-6692-01A |
LRRTM4 |
LGG |
chr2 |
77519023 |
77519023 |
C |
T |
p.L282L |
synonymous_variant |
PASS |
0.555555556 |
TCGA-FG-6692-01A |
TTN |
LGG |
chr2 |
178633304 |
178633304 |
C |
T |
p.K12682K |
synonymous_variant |
PASS |
0.389534884 |
TCGA-FG-6692-01A |
DNAH7 |
LGG |
chr2 |
195855836 |
195855836 |
T |
A |
p.Q2857L |
missense_variant |
PASS |
0.396011396 |
TCGA-FG-6692-01A |
CRYGB |
LGG |
chr2 |
208142787 |
208142787 |
C |
T |
p.V127M |
missense_variant |
PASS |
0.397790055 |