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    • Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
    TCGA-E1-A7Z2-01A SLC6A17 LGG chr1 110198405 110198405 C T p.S715S synonymous_variant PASS 0.402597403
    TCGA-E1-A7Z2-01A OBSCN LGG chr1 228283726 228283726 C T p.C2987C synonymous_variant PASS 0.289719626
    TCGA-E1-A7Z2-01A OR2T2 LGG chr1 248453548 248453548 G A p.V251I missense_variant PASS 0.375
    TCGA-E1-A7Z2-01A KCNS3 LGG chr2 17931111 17931111 C T p.R35W missense_variant PASS 0.327433628
    TCGA-E1-A7Z2-01A APOB LGG chr2 21008274 21008274 T - p.N2865Ifs*9 frameshift_variant PASS 0.368131868
    TCGA-E1-A7Z2-01A MAP3K19 LGG chr2 135024634 135024634 G A p.P5L missense_variant PASS 0.299145299
    TCGA-E1-A7Z2-01A PTPRG LGG chr3 62168001 62168001 G A p.E291K missense_variant PASS 0.319672131
    TCGA-E1-A7Z2-01A ALG3 LGG chr3 184245732 184245732 C T p.G93S missense_variant PASS 0.480769231
    TCGA-E1-A7Z2-01A NAA11 LGG chr4 79325551 79325551 C A p.L109L synonymous_variant PASS 0.358490566
    TCGA-E1-A7Z2-01A IBSP LGG chr4 87802695 87802695 C T p.A49A synonymous_variant PASS 0.352941176