BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-DU-8162-01A | C4BPA | LGG | chr1 | 207124345 | 207124345 | C | A | p.P229T | missense_variant | PASS | 0.192307692 |
| TCGA-DU-8162-01A | IGKV3-20 | LGG | chr2 | 89142848 | 89142848 | G | A | p.T25M | missense_variant | PASS | 0.104166667 |
| TCGA-DU-8162-01A | TAS2R1 | LGG | chr5 | 9629357 | 9629357 | C | T | p.A226T | missense_variant | PASS | 0.127272727 |
| TCGA-DU-8162-01A | PPP1R2B | LGG | chr5 | 156850905 | 156850905 | C | A | non_coding_transcript_exon_var | PASS | 0.117647059 | |
| TCGA-DU-8162-01A | FOXQ1 | LGG | chr6 | 1313050 | 1313050 | C | T | p.R116W | missense_variant | PASS | 0.127659574 |
| TCGA-DU-8162-01A | SLC22A16 | LGG | chr6 | 110456933 | 110456933 | G | A | p.V46V | synonymous_variant | PASS | 0.139534884 |
| TCGA-DU-8162-01A | EGFR | LGG | chr7 | 55165350 | 55165350 | G | T | p.G598V | missense_variant | PASS | 0.571895425 |
| TCGA-DU-8162-01A | FBXO24 | LGG | chr7 | 100590299 | 100590299 | G | A | p.P88P | synonymous_variant | PASS | 0.1875 |
| TCGA-DU-8162-01A | MYOM2 | LGG | chr8 | 2079559 | 2079559 | G | A | p.X488_splice | splice_acceptor_variant | PASS | 0.119402985 |
| TCGA-DU-8162-01A | SLC44A1 | LGG | chr9 | 105389069 | 105389069 | G | A | 3_prime_UTR_variant | PASS | 0.165137615 |