BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-DU-7013-01A |
OR10Z1 |
LGG |
chr1 |
158606654 |
158606654 |
C |
A |
p.C72* |
stop_gained |
PASS |
0.375545852 |
| TCGA-DU-7013-01A |
KCNH1 |
LGG |
chr1 |
210683623 |
210683623 |
C |
G |
p.K876N |
missense_variant |
PASS |
0.323943662 |
| TCGA-DU-7013-01A |
MYT1L |
LGG |
chr2 |
1839307 |
1839307 |
G |
A |
p.S974S |
synonymous_variant |
PASS |
0.424242424 |
| TCGA-DU-7013-01A |
NLRC4 |
LGG |
chr2 |
32251602 |
32251602 |
C |
T |
p.X88_splice |
splice_acceptor_variant |
PASS |
0.448979592 |
| TCGA-DU-7013-01A |
EDAR |
LGG |
chr2 |
108911001 |
108911001 |
C |
T |
p.A201T |
missense_variant |
PASS |
0.416666667 |
| TCGA-DU-7013-01A |
LCT |
LGG |
chr2 |
135809061 |
135809061 |
C |
T |
p.A1096T |
missense_variant |
PASS |
0.409090909 |
| TCGA-DU-7013-01A |
PDE11A |
LGG |
chr2 |
177817869 |
177817869 |
G |
A |
p.R545* |
stop_gained |
PASS |
0.666666667 |
| TCGA-DU-7013-01A |
FGD5 |
LGG |
chr3 |
14820252 |
14820252 |
G |
C |
p.C394S |
missense_variant |
PASS |
0.405405405 |
| TCGA-DU-7013-01A |
DNAH1 |
LGG |
chr3 |
52394553 |
52394553 |
G |
A |
p.R3572Q |
missense_variant |
PASS |
0.357142857 |
| TCGA-DU-7013-01A |
DGKG |
LGG |
chr3 |
186320467 |
186320468 |
- |
T |
|
5_prime_UTR_variant |
PASS |
0.534883721 |
