BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-DU-7012-01A | HSPG2 | LGG | chr1 | 21874908 | 21874908 | G | A | p.R1133C | missense_variant | PASS | 0.333333333 |
| TCGA-DU-7012-01A | GPATCH3 | LGG | chr1 | 26897610 | 26897610 | C | T | p.L189L | synonymous_variant | PASS | 0.261538462 |
| TCGA-DU-7012-01A | OR2M1P | LGG | chr1 | 248122734 | 248122734 | C | G | non_coding_transcript_exon_var | PASS | 0.20979021 | |
| TCGA-DU-7012-01A | VGLL4 | LGG | chr3 | 11558591 | 11558591 | C | T | p.V280I | missense_variant | PASS | 0.223880597 |
| TCGA-DU-7012-01A | PRSS50 | LGG | chr3 | 46714357 | 46714357 | G | A | p.N205N | synonymous_variant | PASS | 0.444444444 |
| TCGA-DU-7012-01A | NIT2 | LGG | chr3 | 100339092 | 100339092 | C | T | p.R5C | missense_variant | PASS | 0.244274809 |
| TCGA-DU-7012-01A | NRROS | LGG | chr3 | 196660899 | 196660899 | C | T | p.P419L | missense_variant | PASS | 0.256944444 |
| TCGA-DU-7012-01A | JAKMIP1 | LGG | chr4 | 6042195 | 6042195 | G | A | p.A687A | synonymous_variant | PASS | 0.163636364 |
| TCGA-DU-7012-01A | ZCCHC4 | LGG | chr4 | 25349633 | 25349633 | C | T | p.Q301* | stop_gained | PASS | 0.284210526 |
| TCGA-DU-7012-01A | AFM | LGG | chr4 | 73487007 | 73487007 | G | A | p.A175T | missense_variant | PASS | 0.216216216 |