BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-DU-7006-01A | EPHA8 | LGG | chr1 | 22589224 | 22589224 | G | A | intron_variant | PASS | 0.378378378 | |
| TCGA-DU-7006-01A | SRRM1 | LGG | chr1 | 24651449 | 24651449 | C | T | p.P188S | missense_variant | PASS | 0.454545455 |
| TCGA-DU-7006-01A | MAST2 | LGG | chr1 | 46033891 | 46033891 | G | C | p.K1209N | missense_variant | PASS | 0.382352941 |
| TCGA-DU-7006-01A | PIK3R3 | LGG | chr1 | 46131945 | 46131946 | - | TGTA | p.N3Ifs*11 | frameshift_variant | PASS | 0.270833333 |
| TCGA-DU-7006-01A | NDC1 | LGG | chr1 | 53800848 | 53800848 | C | A | p.G356V | missense_variant;splice_region | PASS | 0.368421053 |
| TCGA-DU-7006-01A | CACNA1E | LGG | chr1 | 181739225 | 181739225 | G | A | p.V1231I | missense_variant | PASS | 0.365517241 |
| TCGA-DU-7006-01A | KCNT2 | LGG | chr1 | 196228301 | 196228301 | G | A | p.P1111S | missense_variant | PASS | 0.272727273 |
| TCGA-DU-7006-01A | ABCB11 | LGG | chr2 | 168923592 | 168923592 | G | A | 3_prime_UTR_variant | PASS | 0.365853659 | |
| TCGA-DU-7006-01A | PPARG | LGG | chr3 | 12379883 | 12379883 | C | G | p.P88A | missense_variant | PASS | 0.271028037 |
| TCGA-DU-7006-01A | NEK10 | LGG | chr3 | 27311008 | 27311008 | G | A | p.Q193* | stop_gained | PASS | 0.268656716 |