BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-DU-6392-01A | FAM41C | LGG | chr1 | 874214 | 874214 | C | T | non_coding_transcript_exon_var | PASS | 0.464285714 | |
| TCGA-DU-6392-01A | NOC2L | LGG | chr1 | 957126 | 957126 | C | T | p.P109P | synonymous_variant | PASS | 0.418439716 |
| TCGA-DU-6392-01A | KLHL17 | LGG | chr1 | 961624 | 961624 | C | T | splice_region_variant;intron_v | PASS | 0.470588235 | |
| TCGA-DU-6392-01A | KLHL17 | LGG | chr1 | 963234 | 963234 | C | T | p.R390W | missense_variant | PASS | 0.380952381 |
| TCGA-DU-6392-01A | AGRN | LGG | chr1 | 1050784 | 1050784 | C | T | p.R1734C | missense_variant | PASS | 0.416666667 |
| TCGA-DU-6392-01A | TNFRSF4 | LGG | chr1 | 1213005 | 1213005 | G | A | p.Y119Y | synonymous_variant | PASS | 0.285714286 |
| TCGA-DU-6392-01A | UBE2J2 | LGG | chr1 | 1257001 | 1257001 | C | T | p.S135S | synonymous_variant | PASS | 0.352941176 |
| TCGA-DU-6392-01A | ACAP3 | LGG | chr1 | 1296027 | 1296027 | G | A | p.A497V | missense_variant | PASS | 0.214285714 |
| TCGA-DU-6392-01A | ACAP3 | LGG | chr1 | 1298633 | 1298633 | G | T | p.P266H | missense_variant | PASS | 0.153846154 |
| TCGA-DU-6392-01A | ACAP3 | LGG | chr1 | 1300168 | 1300168 | A | G | p.I186T | missense_variant | PASS | 0.264705882 |