BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-81-5911-01A |
NOTCH2 |
GBM |
chr1 |
119969663 |
119969663 |
T |
C |
p.N319S |
missense_variant |
PASS |
0.465116279 |
| TCGA-81-5911-01A |
SOS1 |
GBM |
chr2 |
39007156 |
39007156 |
C |
A |
p.A850S |
missense_variant |
PASS |
0.266233766 |
| TCGA-81-5911-01A |
IL1RL2 |
GBM |
chr2 |
102189245 |
102189245 |
C |
T |
p.D76D |
synonymous_variant |
PASS |
0.310344828 |
| TCGA-81-5911-01A |
PLEKHM3 |
GBM |
chr2 |
207977346 |
207977346 |
G |
C |
p.T284S |
missense_variant |
PASS |
0.2875 |
| TCGA-81-5911-01A |
CNTN6 |
GBM |
chr3 |
1382996 |
1382996 |
C |
T |
p.R741W |
missense_variant |
PASS |
0.298850575 |
| TCGA-81-5911-01A |
FRAS1 |
GBM |
chr4 |
78479663 |
78479663 |
C |
T |
p.N2796N |
synonymous_variant |
PASS |
0.416666667 |
| TCGA-81-5911-01A |
SLC10A6 |
GBM |
chr4 |
86828156 |
86828156 |
C |
T |
p.V200I |
missense_variant |
PASS |
0.402439024 |
| TCGA-81-5911-01A |
RAMP3 |
GBM |
chr7 |
45177337 |
45177337 |
C |
T |
p.N29N |
synonymous_variant |
PASS |
0.257575758 |
| TCGA-81-5911-01A |
EGFR |
GBM |
chr7 |
55154129 |
55154129 |
C |
T |
p.A289V |
missense_variant |
PASS |
0.711598746 |
| TCGA-81-5911-01A |
DTX2 |
GBM |
chr7 |
76483136 |
76483136 |
C |
T |
p.S299S |
synonymous_variant |
PASS |
0.1 |
