BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-76-4931-01A | CLCNKB | GBM | chr1 | 16048394 | 16048394 | C | T | p.R184C | missense_variant | PASS | 0.282051282 |
| TCGA-76-4931-01A | SF3A3 | GBM | chr1 | 37989990 | 37989990 | T | G | 5_prime_UTR_variant | PASS | 0.386138614 | |
| TCGA-76-4931-01A | PPIAL4A | GBM | chr1 | 120889960 | 120889960 | G | A | p.R47H | missense_variant | PASS | 0.408333333 |
| TCGA-76-4931-01A | CHRNB2 | GBM | chr1 | 154569572 | 154569572 | C | T | p.Q59* | stop_gained | PASS | 0.415584416 |
| TCGA-76-4931-01A | ZP4 | GBM | chr1 | 237887395 | 237887395 | A | G | p.T240T | synonymous_variant | PASS | 0.396825397 |
| TCGA-76-4931-01A | GCSAML | GBM | chr1 | 247549192 | 247549192 | A | G | p.M1? | start_lost | PASS | 0.318181818 |
| TCGA-76-4931-01A | DNMT3A | GBM | chr2 | 25247099 | 25247099 | C | T | p.T358T | synonymous_variant | PASS | 0.452380952 |
| TCGA-76-4931-01A | EMILIN1 | GBM | chr2 | 27083131 | 27083131 | G | A | p.T520T | synonymous_variant | PASS | 0.470588235 |
| TCGA-76-4931-01A | XDH | GBM | chr2 | 31348332 | 31348332 | C | T | p.G1028D | missense_variant | PASS | 0.347826087 |
| TCGA-76-4931-01A | SERTAD2 | GBM | chr2 | 64636560 | 64636560 | C | T | p.P104P | synonymous_variant | PASS | 0.537313433 |