BrainBase
a curated knowledgebase for brain diseases
| Sample ID | Gene Symbol | Glioma Grade | Chr | Start Site | End Site | RET | ALT | Amino Acid Change | Effect | Filter | DNA VAF |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCGA-27-1838-01A | FCRL5 | GBM | chr1 | 157520538 | 157520538 | G | A | p.A842V | missense_variant | PASS | 0.555555556 |
| TCGA-27-1838-01A | SPTA1 | GBM | chr1 | 158645223 | 158645223 | G | A | p.R1387C | missense_variant | PASS | 0.340425532 |
| TCGA-27-1838-01A | OR2AK2 | GBM | chr1 | 247966270 | 247966270 | G | A | p.T313T | synonymous_variant | PASS | 0.383561644 |
| TCGA-27-1838-01A | ALLC | GBM | chr2 | 3679925 | 3679925 | G | A | p.V77M | missense_variant | PASS | 0.269230769 |
| TCGA-27-1838-01A | RAD51AP2 | GBM | chr2 | 17515267 | 17515267 | C | A | p.W1050L | missense_variant | PASS | 0.5 |
| TCGA-27-1838-01A | MSH6 | GBM | chr2 | 47798948 | 47798948 | C | T | p.A322V | missense_variant | PASS | 0.236923077 |
| TCGA-27-1838-01A | TSGA10 | GBM | chr2 | 99018349 | 99018349 | C | T | p.R641R | splice_region_variant;synonymo | PASS | 0.426086957 |
| TCGA-27-1838-01A | IL1R1 | GBM | chr2 | 102172715 | 102172715 | A | T | p.S290C | missense_variant | PASS | 0.428571429 |
| TCGA-27-1838-01A | SLC9A4 | GBM | chr2 | 102525097 | 102525097 | G | A | p.R631H | missense_variant | PASS | 0.474452555 |
| TCGA-27-1838-01A | XIRP2 | GBM | chr2 | 167247033 | 167247033 | C | T | p.R1706* | stop_gained | PASS | 0.379084967 |