BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-27-1831-01A |
AGMAT |
GBM |
chr1 |
15577751 |
15577751 |
G |
A |
p.D278D |
synonymous_variant |
PASS |
0.35106383 |
| TCGA-27-1831-01A |
EPHA8 |
GBM |
chr1 |
22598154 |
22598154 |
G |
A |
p.R707H |
missense_variant |
PASS |
0.335403727 |
| TCGA-27-1831-01A |
HTR1D |
GBM |
chr1 |
23193578 |
23193578 |
G |
A |
p.I214I |
synonymous_variant |
PASS |
0.416666667 |
| TCGA-27-1831-01A |
SLC9C2 |
GBM |
chr1 |
173583596 |
173583596 |
T |
A |
p.I184F |
missense_variant |
PASS |
0.335877863 |
| TCGA-27-1831-01A |
USH2A |
GBM |
chr1 |
215798915 |
215798915 |
C |
T |
p.R3317H |
missense_variant |
PASS |
0.326797386 |
| TCGA-27-1831-01A |
CCDC185 |
GBM |
chr1 |
223394889 |
223394889 |
C |
T |
p.R472C |
missense_variant |
PASS |
0.380952381 |
| TCGA-27-1831-01A |
NLRP3 |
GBM |
chr1 |
247424623 |
247424623 |
G |
T |
p.A394S |
missense_variant |
PASS |
0.346153846 |
| TCGA-27-1831-01A |
KCNS3 |
GBM |
chr2 |
17931051 |
17931051 |
G |
A |
p.E15K |
missense_variant |
PASS |
0.322368421 |
| TCGA-27-1831-01A |
APOB |
GBM |
chr2 |
21004640 |
21004640 |
C |
T |
p.A3942T |
missense_variant |
PASS |
0.297297297 |
| TCGA-27-1831-01A |
CDCP1 |
GBM |
chr3 |
45091428 |
45091428 |
C |
T |
p.V580M |
missense_variant |
PASS |
0.292682927 |
