BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-26-1439-01A TCHH GBM chr1 152109018 152109018 C T p.R1400H missense_variant PASS 0.331125828
TCGA-26-1439-01A PCP4L1 GBM chr1 161283698 161283698 C T p.Q14* stop_gained PASS 0.304347826
TCGA-26-1439-01A URB2 GBM chr1 229636397 229636398 - AAA p.P595_E596insK inframe_insertion PASS 0.306954436
TCGA-26-1439-01A MFSD2B GBM chr2 24024168 24024168 G A p.A463T missense_variant PASS 0.353658537
TCGA-26-1439-01A VAX2 GBM chr2 70933042 70933042 G A p.A237A synonymous_variant PASS 0.224137931
TCGA-26-1439-01A IL17RD GBM chr3 57098241 57098241 C T p.V488I missense_variant PASS 0.217391304
TCGA-26-1439-01A EFCAB12 GBM chr3 129421793 129421793 C T p.P20P synonymous_variant PASS 0.468085106
TCGA-26-1439-01A HELQ GBM chr4 83441400 83441400 C A p.E523* stop_gained PASS 0.324324324
TCGA-26-1439-01A DCHS2 GBM chr4 154298648 154298648 C G p.R1434P missense_variant PASS 0.27607362
TCGA-26-1439-01A DCHS2 GBM chr4 154321084 154321084 A G p.L984L synonymous_variant PASS 0.398305085