BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-26-1439-01A |
TCHH |
GBM |
chr1 |
152109018 |
152109018 |
C |
T |
p.R1400H |
missense_variant |
PASS |
0.331125828 |
TCGA-26-1439-01A |
PCP4L1 |
GBM |
chr1 |
161283698 |
161283698 |
C |
T |
p.Q14* |
stop_gained |
PASS |
0.304347826 |
TCGA-26-1439-01A |
URB2 |
GBM |
chr1 |
229636397 |
229636398 |
- |
AAA |
p.P595_E596insK |
inframe_insertion |
PASS |
0.306954436 |
TCGA-26-1439-01A |
MFSD2B |
GBM |
chr2 |
24024168 |
24024168 |
G |
A |
p.A463T |
missense_variant |
PASS |
0.353658537 |
TCGA-26-1439-01A |
VAX2 |
GBM |
chr2 |
70933042 |
70933042 |
G |
A |
p.A237A |
synonymous_variant |
PASS |
0.224137931 |
TCGA-26-1439-01A |
IL17RD |
GBM |
chr3 |
57098241 |
57098241 |
C |
T |
p.V488I |
missense_variant |
PASS |
0.217391304 |
TCGA-26-1439-01A |
EFCAB12 |
GBM |
chr3 |
129421793 |
129421793 |
C |
T |
p.P20P |
synonymous_variant |
PASS |
0.468085106 |
TCGA-26-1439-01A |
HELQ |
GBM |
chr4 |
83441400 |
83441400 |
C |
A |
p.E523* |
stop_gained |
PASS |
0.324324324 |
TCGA-26-1439-01A |
DCHS2 |
GBM |
chr4 |
154298648 |
154298648 |
C |
G |
p.R1434P |
missense_variant |
PASS |
0.27607362 |
TCGA-26-1439-01A |
DCHS2 |
GBM |
chr4 |
154321084 |
154321084 |
A |
G |
p.L984L |
synonymous_variant |
PASS |
0.398305085 |