BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-14-1456-01B |
SDCCAG8 |
GBM |
chr1 |
243344272 |
243344272 |
G |
A |
p.E472K |
missense_variant |
PASS |
0.440677966 |
TCGA-14-1456-01B |
IDH1 |
GBM |
chr2 |
208248388 |
208248388 |
C |
T |
p.R132H |
missense_variant |
PASS |
0.278195489 |
TCGA-14-1456-01B |
SPP2 |
GBM |
chr2 |
234058859 |
234058859 |
C |
G |
p.N78K |
missense_variant |
PASS |
0.352941176 |
TCGA-14-1456-01B |
PER2 |
GBM |
chr2 |
238249118 |
238249118 |
G |
A |
p.R1188C |
missense_variant |
PASS |
0.417721519 |
TCGA-14-1456-01B |
PIK3R1 |
GBM |
chr5 |
68293319 |
68293319 |
A |
G |
p.K379E |
missense_variant |
PASS |
0.209876543 |
TCGA-14-1456-01B |
ARSK |
GBM |
chr5 |
95601026 |
95601026 |
T |
C |
p.Y426H |
missense_variant |
PASS |
0.420408163 |
TCGA-14-1456-01B |
CD2AP |
GBM |
chr6 |
47579442 |
47579442 |
C |
T |
p.P321S |
missense_variant |
PASS |
0.330097087 |
TCGA-14-1456-01B |
EGFR |
GBM |
chr7 |
55151328 |
55151328 |
C |
T |
p.S198S |
synonymous_variant |
PASS |
0.232067511 |
TCGA-14-1456-01B |
EGFR |
GBM |
chr7 |
55154129 |
55154129 |
C |
T |
p.A289V |
missense_variant |
PASS |
0.238461538 |
TCGA-14-1456-01B |
SULF1 |
GBM |
chr8 |
69576000 |
69576000 |
A |
C |
p.K68T |
missense_variant |
PASS |
0.184615385 |