BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-14-1455-01A |
NR0B2 |
GBM |
chr1 |
26913571 |
26913571 |
C |
T |
p.E124K |
missense_variant |
PASS |
0.422222222 |
TCGA-14-1455-01A |
SLC16A1 |
GBM |
chr1 |
112923975 |
112923975 |
C |
G |
|
intron_variant |
PASS |
0.392857143 |
TCGA-14-1455-01A |
SYCP1 |
GBM |
chr1 |
114874517 |
114874517 |
C |
T |
p.R204W |
missense_variant |
PASS |
0.419117647 |
TCGA-14-1455-01A |
CASQ2 |
GBM |
chr1 |
115705235 |
115705235 |
G |
A |
p.P299L |
missense_variant |
PASS |
0.119047619 |
TCGA-14-1455-01A |
FGFR1 |
GBM |
chr1 |
152306686 |
152306686 |
G |
A |
p.H2734Y |
missense_variant |
PASS |
0.152173913 |
TCGA-14-1455-01A |
FCRL6 |
GBM |
chr1 |
159810180 |
159810180 |
G |
A |
p.A325T |
missense_variant |
PASS |
0.139720559 |
TCGA-14-1455-01A |
FCGR3B |
GBM |
chr1 |
161626342 |
161626342 |
C |
T |
p.R127K |
missense_variant |
PASS |
0.472972973 |
TCGA-14-1455-01A |
USH2A |
GBM |
chr1 |
215675568 |
215675568 |
G |
A |
p.R4115C |
missense_variant |
PASS |
0.477011494 |
TCGA-14-1455-01A |
LYST |
GBM |
chr1 |
235746475 |
235746476 |
AC |
- |
p.R2611Lfs*5 |
frameshift_variant |
PASS |
0.424242424 |
TCGA-14-1455-01A |
CRIM1 |
GBM |
chr2 |
36547137 |
36547137 |
T |
G |
p.I967R |
missense_variant |
PASS |
0.4140625 |